CI01000299_00670925_00672195


Basic Information

Item Value
gene id CI01000299_00670925_00672195
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 670680 ~ 673625 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00670925_00672195.mRNA
AGGTTCATTTTGTCCCCAGTATTCAAGTATTCCTGCTTTATTCGCCATCAAACTTTTGCCCAAATCAATGTGCATGTTTAATTTATCAGTAAAGGACCAGAAAAATCTCACAAAAGATGAAACATCATAATCATAACCATGTTACATCAGGCTACGTTTGCTATCAGAACGAGCGACAATGTCATTTTAAAGGATTAGTTCACTTCAGAATTAAAATTTCTTGATAATTTACTCACCCCCATGTCATCTAAGATGTTTATGTCTTTCTTTCTTCAGTCGAAAAGAAATGAAGGTTTTTGACGAAAACATTCCAGGATTATTCTCCTTATAGTGGACTTCAACAAGGTTCAATGGGTTGAAGGTCCAAATTGCAGTTTAAATGCAGCTTTAAAGGGCTCTACACAAACCCAGACGACGAACAAGGGTCTTGTCTAGCAAAAATGTATATACTTTTTAACCACAAATGCTCATCTTGCACTAGCTCTGCGATGCGCCACGCATTACGTAATCATGTAATCACGTTGGAAAGGTCACGTGTGACGTAGGCGAAGAACCGCAATAGGGCGAAAAACCCGTCCGACATCATCGTTTTAACTTTTTTTTTGTAAAGGGTGGTTGACTTAGTCTTTGCACATTCGCTTTGTAGACACTGGATCGGTACTTCCGCCTTTCCAATGTGACCTTTCCAATGTGATTACGTCATGAGTGGTGTTTTGCTAGACAAGAAGCTTATTCCTTGTGTAGAACTCTTTGAAGCTGCACTGAAACTGCAATTTGGACCTTCAACCCATTGAGCCCCAGTAAAGTCCACTATATGATGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTCGACTGAGGAAGGAAAGACATACATCTTGGATGACATGGGGGTAAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAATTTATCAGTAAAGGACCAGAAAATCTCACAAAAATGAAACATCACAACCATGTTACAACAGGCTACGTCTGCCACCAGAATGAGCAACAAATGTCATTTTAAGGCAAATGCATCTGTATTGTTGGATCAAATACATTATGACTGTATTATCTTATCCTTTAAAACGTCCTCTCTTCTTCTGCATTATGTCCCTGCCACGGTAATCTGCTTTTACTGGGTGAAGCTCTCAAATGTGATTACTTCACAACAGATAACAAAGGGGGAAAAACCCTATCTATGTCGCAGCATGGAGTATGAATTAAAGCTACACTATGGCCTTAAGGACTTCATAAATCCAATGCTAAACAGGGGCTCATCCTCCTGAGTGAGTAGGGCCACCTACTGGGGCTGTTTATATTGCATGAGTGAGTTTTAATTGGAGGCAGTGCTTTACAACTCTTGCAATGTGGGGAAAACTAACTGAAGAGTTTACTGAGCATGACAAACAAACAATGGACAGAGTTTGTGATGTGGCACGATGTTGGCACCTTGTCCTCACCTGATATCTCCTGGAGTGGCACATTATGGAGACTGAAGCCTTTGGTCGTGAACGCCTGGCGCACATCGCTGCAGCTGCGCGATTTTACATCTCCAGCACATGACAGCGACAATAGAAGCGATAAAGAAGTGAAAACCACGACAGGTGTCTTCAACATCCCTCCTGCGAGCAAATCCAGCCGATGCGTAAAAGCGCAAAACCCCCAAGACGCGCTCAGCGCACCGGCGTCTCCAGCTGCAGGTGGACAAATGTTTCGATCATACAATCGCTCATCAATGATCAATCACGCGCTCTGTCGCATCCGGCTCATAGCAGAATTTTCCAACGGATCCTCTCGGAACGAACGCGTGTGCGATTAGAACGGCGAAACGTCCAGAATGGATCCGGAGCGGCGCGCTCTCAACTTCTGCTCTGTGTTTCTATCAGAGGAGAGAAAGTAGCAATCCTCCCTCTCTCTCACACACACACAGAGAGACACACAGACAAACCGCACAACCCAGTGGCGAGTATGACAATATGGAAAAACACGGACTGGATTCTTGGAGGCGCATGGCGTTTTGCCTCAGGAGATGCTGAAGCAAAAACTCGAACTACTTTCAATAAA
>TU464604
GCAATTTGGACCTTCAACCCATTGAGCCCCAGTAAAGTCCACTATATGATGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTCGACTGAGGAAGGAAAGACATACATCTTGGATGACATGGGGAGTTTGTGATGTGGCACGATGTTGGCACCTTGTCCTCACCTGATATCTCCTGGAGTGGCACATTATGGAGACTGAAGCCTTTGGTCGTGAACGCCTGGCGCACATCGCTGCAGCTGCGCGATTTTACATCTCCAGCACATGACAGCGACAATAGAAGCGATAAAGAAGTGAAAACCACGACAGGTGTCTTCAACATCCCTCCTGCGAGCAAATCCAGCCGATGCGTAAAAGCGCAAAACCCCCAAGACGCGCTCAGCGCACCGGCGTCTCCAGCTGCAGGTGGACAAATGTTTCGATCATACAATCGCTCATCAATGATCAATCACGCGCTCTGTCGCATCCGGCTCATAGCAGAATTTTCCAACGGATCCTCTCGGAACGAACGCGTGTGCGATTAGAACGGCGAAACGTCCAGAATGGATCCGGAGCGGCGCGCTCTCAACTTCTGCTCTGTGTTTCTATCAGAGGAGAGAAAGTAGCAATCCTCCC

Function

NR:

description
glypican-6 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00670925_00672195.mRNA False 2095 mRNA 0.43 2 670680 673625
TU464604 True 623 TUCP 0.50 2 670834 672856

Neighbor

gene id symbol gene type direction distance location
CI01000299_00452374_00452868 NA coding downstream 217812 451341 ~ 452868 (-)
CI01000299_00448948_00449565 NA coding downstream 220923 448863 ~ 449757 (-)
CI01000299_00185106_00209299 NA coding downstream 461381 184774 ~ 209299 (-)
CI01000299_00169255_00170695 NA coding downstream 499694 169223 ~ 170986 (-)
CI01000299_01003547_01034507 NA coding upstream 329694 1003319 ~ 1034812 (-)
CI01000299_01057889_01063623 NA coding upstream 384195 1057820 ~ 1063623 (-)
CI01000299_01114487_01122666 NA coding upstream 440125 1113750 ~ 1124230 (-)
CI01000299_01222994_01268707 NA coding upstream 549234 1222859 ~ 1270326 (-)
CI01000299_01338052_01368900 NA coding upstream 664247 1337872 ~ 1369376 (-)
G404169 NA non-coding downstream 65098 605073 ~ 605582 (-)
G404168 NA non-coding downstream 69679 596568 ~ 601001 (-)
G404166 NA non-coding downstream 84333 586146 ~ 586347 (-)
G404162 NA non-coding downstream 114617 555853 ~ 556063 (-)
G404161 NA non-coding downstream 115029 555444 ~ 555651 (-)
G404293 NA non-coding upstream 452111 1125736 ~ 1127433 (-)
G404380 NA non-coding upstream 457418 1131043 ~ 1131262 (-)
G404457 NA non-coding upstream 473831 1147456 ~ 1147727 (-)
G404484 NA non-coding upstream 523816 1197441 ~ 1198241 (-)
G404486 NA non-coding upstream 525732 1199357 ~ 1200671 (-)
G404372 NA other upstream 396982 1070607 ~ 1075891 (-)
G404784 NA other upstream 986030 1659655 ~ 1660000 (-)
G404976 NA other upstream 1182014 1855639 ~ 1880988 (-)
G405053 NA other upstream 1344062 2017687 ~ 2018050 (-)

Expression


Co-expression Network