CI01000299_00795673_00796901 (GPC6)


Basic Information

Item Value
gene id CI01000299_00795673_00796901
gene name GPC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 795673 ~ 797157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00795673_00796901.mRNA
AATTCTTTCTGGAGTTGCTGGACAACTCGGAAAAGTCACTCAACGACATGTTTGTGCGCACATATGGCAAACTGTACACTCACAACTCAGAGATGTTTGAGGACCTGTTCTCTGAGCTCAAGCGCTACTACACCGGCGGCAACGTCAACCTTGAGGAAGTGCTGAATGACTTCTGGTCGAGACTGCTGGAACGCATGTTTCAGCTGCTTAACTCTCAGTACACGTTCACTGACGACTATCTGGAGTGTATCAGCAAATACACAGACCAGTTAAAACCCTTTGGAGATGTTCCTCGCAAGCTCAAGGCCCAGGTCACCAAGGCCTTTATTGCGGCTCGCTCGTTCGTTCAAGGACTCATGGTGGGTCGGGAAGTGGCCAACAGAGTGGCAAAGAAGCCGTGTATGAGCTTTGATGTGACAGCTGCACGCCGGACAGGTTATGACATCAGTGATGAGGCGAGATGGCCTGCGGAGCAATGGACGGTTTCTGAAGGGAAGATAAAAGCGTGCTGACTGGCAGCCGCAGCGGGCATCTCTGCTCCATCTCTCAGATCCGTCTTTGATAGCTCGTCTCAATCACATTTTCCGCTGGATGTTTTGCTGTTTAATGGCTTACTGGATGATTATAAGCATTATTGACAGATTTCCTACCGAAAAAGCTCAGAGAATGTAGTGAGGCAGCCAGGCCTGGTCTGTTTGGAGTGGTTTTGCTGAGGTAAAATGTAGATAAGCTGCTTTTGTATTTGTGTCATCTGTAATGCCAACGGTA

Function

symbol description
gpc6 Involved in cell migration. Located in nucleus. Implicated in omodysplasia 1.

GO: NA

KEGG:

id description
K08112 GPC6; glypican 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00795673_00796901.mRNA True 768 mRNA 0.49 2 795673 797157

Neighbor

gene id symbol gene type direction distance location
CI01000299_00689032_00727635 NA coding upstream 67837 688906 ~ 727836 (+)
CI01000299_00419297_00444862 NA coding upstream 349785 419297 ~ 445888 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding upstream 433587 345042 ~ 362086 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding upstream 465510 315123 ~ 330163 (+)
CI01000299_00255175_00294177 MBNL2 coding upstream 501496 255175 ~ 294177 (+)
CI01000299_00826470_00828773 NA coding downstream 29276 826433 ~ 828960 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding downstream 65646 862803 ~ 911972 (+)
CI01000299_01036243_01046776 NA coding downstream 237880 1035037 ~ 1047603 (+)
CI01000299_01049508_01055558 NA coding downstream 252233 1049390 ~ 1055736 (+)
CI01000299_01139684_01147241 NA coding downstream 342340 1139497 ~ 1147248 (+)
G404016 NA non-coding upstream 145859 649415 ~ 649814 (+)
G403971 NA non-coding upstream 192090 602832 ~ 603583 (+)
G403965 NA non-coding upstream 212550 582756 ~ 583123 (+)
G403952 NA non-coding upstream 244931 550501 ~ 550742 (+)
G403595 NA non-coding upstream 632878 60419 ~ 162795 (+)
G404137 NA non-coding downstream 273451 1070608 ~ 1075893 (+)
G404074 NA non-coding downstream 326422 1123579 ~ 1125274 (+)
G404075 NA non-coding downstream 328583 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 344199 1141356 ~ 1141636 (+)
G404424 NA non-coding downstream 398320 1195477 ~ 1195736 (+)
G403972 NA other upstream 189323 604870 ~ 606350 (+)
G403609 NA other upstream 384885 364139 ~ 410788 (+)
G403578 NA other upstream 723402 35462 ~ 72271 (+)
G405609 NA other downstream 2357440 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3334101 4131060 ~ 4133941 (+)
G405842 NA other downstream 3498376 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3692661 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3905225 4703071 ~ 4704780 (+)

Expression


Co-expression Network