CI01000299_01036243_01046776


Basic Information

Item Value
gene id CI01000299_01036243_01046776
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1035037 ~ 1047603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_01036243_01046776.mRNA
GTATAAAAAATTTGTTATTAAGTGCAACGTTTCAGTCCTATGACCTTCGGCCCTATGACCATTTTTTATGTTTCTGAAAGTCTCTTATGTTCAGCAAGGCTGCATTTATTTGATCAGAAACACAGTAATATTTACAAATATATTAAATTTAAAAGATCCGTTTTCTATGTAAATATATTTTAAAATATTCCTGTGATTCAAAGCTGAATTTTCAGCATCATTACTCCAGTTTTCAGCGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGAAATATTTCTTATTATTAGCAATGTTCAAAACAGTTGTGCTGCTTCATTTTTTTATTTTATTTATTTATTTATTTTTTGGTGGAAACCGTGATACATTTTTTTTTTTTCAAGATTCTTTGATTAATAGAATAGAACAGCATTTATTTGAAATATAAATCTTTTGTAACATTATAAATGTCTTTACTTTCACTTTTGATCTATTTAATATGGAAGCTTGTTTCCGCCACTAAATAAAAAATAAAAAAACTTTATCTCACAATTCTCACTTTTTCTCGCAATTGTGAGTTTGCATTTCACAATTCTGACTTTCTTCTCAGAATTGTGAGATTTAGACTCACAAATGCAAGTTATGAAGTCAGAATTGCATGTTATAAAGTCACATTTCTGACTTTTTTTCCCTCGCAATTCCGAGTTTTTATCGTGCAATTCTGACTTTTTTTTGTGAGATATAAACACAGTTGCGAGTTATAAAGTCAGAATTGCATGATATAAACTTGCAATTGTGAGTTTATATCTCGCAATTCTGAGAAAAAAGTTTTTTACTTTTTATTTCATGGTGGAAACAAGCTTTCATAGTTTAAGGGATCATTGCCGAATAAAATTTTTTTTTTTCCTTCAAAATTTCTTTTTTTTTTTTTCTTTAAATGAGTGCATAAGTCTATTTACTTATTAGACAATATTTACTTGTCTAAATAATGTTATGTCTTAAATGCGGTCAACAGAGCTAAACATAAATTAATTTAATGATTGGACCCCAATTATGACATGGAACTATCTGAAATATTTCTGTACAGTCCAGCTACTATTCACGCAACCCAAGATGGCTTTGGTGCAGATTGTGTTCTTGTGTATCATCATGTCATAAAAACCAAGTAAAGTAGTTTTCTGTTTACTTCTGTAGGGTTTCATTCACTCATGCAACCGCAGATGGCCTTGGGCGCTCGTGTTCAATCTCTGTCTTCATCATTTAAGATGCTTCGGTATCATCTGAGGGTCTCTCGGCCGTGGCCCGTCTCTCTGGATAAGGGCACTCAGTCTCTGACCCCTCAAGGCTTTCAAACCTGTGCTATAGCTCCAGACTGTCAAATGAAACAGGGAATTCACGGCAAACCTAAACAGTTCTCCACCATCCACATGTTTCCTCTGAGGACCGCAGATATACAGCACTTTTCAGATTGTGTCTTGAGATCAGGGAGAGATTATTGGAAGCTGCAGAGCAAGAAAAAAAGAGGTATGACAAATGCACGGCAGAGAACCACGCTATCTGACAAATTAGATACTACGAGGACAAACAGGACCTGCTTTAGAAAGGCTGTATTAAGCTGGCAAATAAATAAGGATTGTGGCCGTCAGTCTGCACGGGTTGGCAAACAGAAACACGTGTTTGGGCTCTTGTACCTCTCTGCACACCAGCTCGTTTATCTTGGCTGTCAGTTAAAGGGCAATGTATACGAAAAGGTTGGAGTCGACGGGTCACAAGGTCCACGGTTATATATTGACTTTCTATTACTTGAACCTGGGGGAGACGGTAGCGTAGAACGGTCACACCTAGACAACCAAACAAAACCCACACATTCTCACAACTACAGGGTTGGAATCAAGATCTGCTGCACCACGGTCAGAGCATCAGTTAATCTGGTTTTCACATCCGTGTGCGGATCGATCGCAGCTCGGATCACTTGTGGCTTCATTTGGCCTTGCGTGACAGCTTTTGAGCTGCTCTAAATCAAACACAACCACACACACACACACACACACACACAGGTCTAGATCTGGACTGCTGGACTGAATTAACCCGGTTTAATAAGGGGGACAAGGGACAATCCGTTTTTGAGAGCAAGACGACACTCCAAAAAAAAAAAAAAAAAAAAAAAAATTTCATTACCACACCTGTCAATGAACAGAAATTAGTTACATGGTCATATATATAATCATCCAAAGGTTTGGGTTGGTCGGTAAGGTTTTTTCTTTATGTTTTTGAAAGAAATCTTACCTGCTCACCAAGACTGCATTTATTTGATCAAAAATACAGTAAAACAATAATATTGTAAAATATTATTACAATTTAAAAAAAATCGATTTTCTAATTGAATATATTTTAAAATGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTGCTCCAGTCTTCAGTGTCACATGATCCATCATTTCCTGAAAACAGTTACTTCATATTTTTGTGGAAACCATTTTCTGAGGATCCATTTTCTTGGTGATTTTTTCAGGATTCTGATGATTTAAAAGTTTGAAAGAACATAATTTATTTGAAATAGAAAGATTTTGTAACATTATAAATGTATTTACTGCCACTTTTAAACTATTTGTCCTTGCTACAATAAAACTAAGTTATGTTAAAAAAATGTTATTGCCTCCAAAGTTATGAATGGTAGTTTGTGAGTGTATAATGAGCTTTTTTTATGGTTATCACAATACTGATTTGCATGTAACGACACTCTGCAATTTAAATCATTTATCATGTTCCTGAATTGCTCGCTAAAGGCCTTTTTACTTTGCATTTGACGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_01036243_01046776.mRNA True 2831 mRNA 0.35 5 1035037 1047603

Neighbor

gene id symbol gene type direction distance location
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 123065 862803 ~ 911972 (+)
CI01000299_00826470_00828773 NA coding upstream 206077 826433 ~ 828960 (+)
CI01000299_00795673_00796901 GPC6 coding upstream 237880 795673 ~ 797157 (+)
CI01000299_00689032_00727635 NA coding upstream 307201 688906 ~ 727836 (+)
CI01000299_00419297_00444862 NA coding upstream 589149 419297 ~ 445888 (+)
CI01000299_01049508_01055558 NA coding downstream 1787 1049390 ~ 1055736 (+)
CI01000299_01139684_01147241 NA coding downstream 91894 1139497 ~ 1147248 (+)
CI01000299_01197545_01215711 NA coding downstream 149819 1197422 ~ 1215989 (+)
CI01000299_01855614_01858092 SLITRK6 coding downstream 808011 1855614 ~ 1858703 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 1069258 2116861 ~ 2121858 (+)
G404016 NA non-coding upstream 385223 649415 ~ 649814 (+)
G403971 NA non-coding upstream 431454 602832 ~ 603583 (+)
G403965 NA non-coding upstream 451914 582756 ~ 583123 (+)
G403952 NA non-coding upstream 484295 550501 ~ 550742 (+)
G403595 NA non-coding upstream 872242 60419 ~ 162795 (+)
G404137 NA non-coding downstream 23005 1070608 ~ 1075893 (+)
G404074 NA non-coding downstream 75976 1123579 ~ 1125274 (+)
G404075 NA non-coding downstream 78137 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 93753 1141356 ~ 1141636 (+)
G404424 NA non-coding downstream 147874 1195477 ~ 1195736 (+)
G403972 NA other upstream 428687 604870 ~ 606350 (+)
G403609 NA other upstream 624249 364139 ~ 410788 (+)
G403578 NA other upstream 962766 35462 ~ 72271 (+)
G405609 NA other downstream 2106994 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3083655 4131060 ~ 4133941 (+)
G405842 NA other downstream 3247930 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3442215 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3654779 4703071 ~ 4704780 (+)

Expression


Co-expression Network