CI01000299_01693958_01696561 (SLITRK5)


Basic Information

Item Value
gene id CI01000299_01693958_01696561
gene name SLITRK5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1692924 ~ 1697305 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_01693958_01696561.mRNA
AGAGTGACACTGATGTGTAGATTTGCTCATCTGTCTCGTTCAACGGCAGATTTTCAAGTTGGAAACCATGGAGATGTCGATTTGCTCAGTGCAAGAGAAACTGGCTTTACGTTTAGCCTCTTTGAATTGAGATGCCGCCGGATAATATGTTGGAAATGCATTCCCAAATTGCGCATTGGAGAGTAATTGTGCCAGTCGATGTTCATTTAAATTTCAAAGGAGCGTTAACGTTTTCTCCTTTTTCCCTCTTCGTTCTCCCCTCTATGTCTTCGTTTAATGTGCCATGATGAAAATATTGTGGTTGTATTTGAAATATCATGAGCATTACATAATATACATGATGTATTGTATTGAATAAATCAATGCATTTGATAGATATCGTTGATAGAGTTTGGTATGAGACTATTCTGATATTATTTAGATAGCCTACAGTTATATCGAATCCATTTATTACCTCTTGCATTGCAAAGTTTAGGCTAAAGAACAGTGCACGCTGGCTATGCAATTCAGCATCTGCTTTTGCATTAAGTAGGAACAGTTTGCTTTACATTAATTGGAAGGATCCTGCGATTTGTTTTTGAGATTTTCCTGTAACATCTTGTGATTGTCCACCATTTAATGTAGTTTGCAGATGTAGATATTGATTGTTCATGTAACAGACATTCATCACATCTTTTCCTTTTCTAGATGACACCCCAAACTACAACTGCACTACCGTGAGCTGGGCCATTCCTGCACAAGAAAATGCATATCTGGATACTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGATGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAAGGCATTCTTACGGTCAGTTGTGAGAACAGGGGCATTGTGCGACTGTCGGAAATAAGCCCGGTGCAATTTTCTATGTACCATCTTTTACTGACAGGTAATTTGCTAAAAAGATTGTCTGTCAATGACTTCATCAACTATACTGGAGTTACCATTTTGCATTTAGGTAATAATGATATATCTGAGGTGGAGACTGGGGCGTTCAATGGACTCCAGGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATTCTTAGGGACGACACTTTCGTCGGACTCGAGAGCCTAGAATACCTGCAGATTGATTATAATTTTATTAGCACTATTGAACCGAATGCTCTGAGCAGGCTTCATCAAATGACTGTGCTGATTCTCAATGACAACTTGTTGTCCTCTCTGCCCACAAACATTTTCCGGAATGTGCCCCTGACGCACCTGGATCTTAGGGGAAATCGCTTAAAAATGTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTAGTGGAATTACAGCTTGAGGAAAATCCATGGAATTGCTCTTGCGAGCTCATTGCGCTCAAGGCTTGGCTGGAGAGCATCGCCTACACTGCTCTGGTGGGGGAGGTGGTTTGTGAGACTCCTTTCAGGCTCCATGGCAGAGATCTGGACGAGGTCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATATCAGAGTACGAGATGCGCCCTCCTCCCCCGCTCAGCACCAGCAGCTATTTCCAGACTACGCCAGCGGCTGTGACGGCATCAGCCACGTCTTCGGCCGTCCTGCGATCCTCATCTAGGCCGACCAAGGGCACCCGCCAATCCAGCAAAACCAAGTCCAAGCCCACTTCTCGAATCCCAGCCAACCCCTACAACTACGGGCCCATCATTGCTTTTCAGACCAAATCTCCCGTGCCTTTGGATTGCCCCACCACCTGTACATGCAATCTGCAAATCTCTGACCTGGGGCTAAACGTCAACTGCCAGGAAAGGAAGATCGAAAACATATCAGATCTTAAGCCCAAGCCATACAATCCTAAAAAGATGTACCTCACGGGGAACTACATCCCCGTCGTACGTAGATCTGACTTCGTGGAGGCTGAGGGACTGGATTTATTGCACCTGGGAAACAATCGGATAGCACTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGACTCACAGCAGATATGTTCTTTGGGCTAAAGAGTCTGCAGTACTTGTATTTAGAATATAATAAGATTCGAGAGATTGTAGGAGGCACCTTCCGCTTTGTGCCCAACCTTCAGCTACTTTTCCTCAATAACAATCTTTTAAAAACGTTGCCAGGAGGCATCTTCTCTAGTCTGTCTCTCTCCCGCCTCAACCTTCGCAGCAACCAATTTCAAAACCTGCCTGTGAGTGGAGTTCTGGACCAGCTGAAAGCATTGGTTCAGATTGACCTGTTCGAGAACCCTTGGGATTGCACCTGCGACGTGGTTGGCATGAAGATCTGGTTGGAGCAGCTGAACACCGGAACGGTGGTGAACGACGTCAAATGCGTGACACCCAAGCGGCTTGCAGGGCAGGATATGCGGGTTGTCCCTTCTGAGCAGTTATGTCCAGATTACTCTGACATCATCGTGTCCACTGTGGTTCCTTCTGAGGAGCCTTCAGCAGACAGGATCACCACCACCGAGACACCCCAGAGGTTTAACACCACTTCCAGTAATGTTCCTTTGTCTGTTCTGATTCTCAGCCTGCTCCTTGTTTTCATAATGTCCGTGTTTGTGGCAGCCGGCCTGTTTGTGGTGGTGATGAAGAGGCGTAAAAAGTCTCAGAGCGACCGTACCAGCACAAACAACTCGGACGTGAGCTCCTTCAACCTGCAGTACAATCTCTATAGCAATCGCTCTGTCCCCAAGGTCAAGGCCCCAGCGGGTCACGTCTATGAGTACATTCCCCATCCATTAGGTCACATGTGCAAAAATCCAATCTACAGGTCCCGGGAAGGGAACGCTGTGGAGGATTACCCCGATCTGCACGAACTCAAGGTCACCTACAGGAGTAATGCTGACGAGGACCAGGAGGTCACCTTGAGGAGCCCCAATTACACGGTGAGCACCATCGAGCCTCGTGAGCAGCCGTCTCCTGTTCAGGATGCAGAACACTTCTTCAGAGGGATTCTTGAGCCGGATAAATCTCCATCGACTGCTGGCAGCAGGTTTGAATATAAGTACACTGGCCCCGTCCCGTACACATACCAACCAAACTTCGATGTTAGGCGCCAGTTCTTACATCCTGAAGGAATACGAGAGACTATGCTATATGGTCCAGCGCCAAGTACTGTCTATGTGGAGCCCAATAGAAATGACTATTTGGAACTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGTCAGTTTTAAGTCTTGGTCTATCTATAAATGCAGTAGAAGCATTTCCCCCCTTATACTGACTCAAACTGGAGGGTGCCTTGGCACAATATACACCAACTTAAAGAAAAAAAAAAAATCCAAAACCTTCAGTGGGGTGTGCCGAACTATGTTACTTTAATTTCAGAACCACATGGCATTACAGAAATAACTAAGAATGAAAATAAATAAATAAATAAATAGAGCTCGCTGAACTTTGATGAAAGCACGAGTTGTGATATAAAACTGGCGATGCAAAATCTATTTTTTTAAGTCGATGATTGAATACGCATAAATCTAACTGTACAGGTTAATCTCACCCAAATACATTTTCAGGAATATAATCATACAAATATTGTGAATTTAAAGGGGTTGGGGAGGGGGTTCACATTCAAGAACAAAAGAGAAAAAAAAAACTTTCTGACAGAAACACTATACAGCAGCGCATCCAATCAAGCAGGACAATTTCTCTGCTTTAGTCTGTAAGTAAGTACTGTATTTATTGGTATACTCTTTGCCATGTATTTTCAACATTTTTTCAATGCTCATCAATATTATGTGTGTCATGTCCCATGATTCTCTGTACGAACATTTTGTTTGTAGTTTCCGATCACTTACTGTAGCTTGCATTGTACAAGTGGCTTTTTTTGAGCAGTGGCACACCCCAATGTCGAAGAGAGACTTTGCATCATTTAACGATTTCAAAAGGAAAAGTGTCTTTGTATGCTGTCTGCACTTTTTTGGAAGATGGAAGGCCACAGGGTCTTCCCAGCTAACATTAGAAGAAATATTATATATTAAAAATGAATATGTGTATTCATTCTTAATATGTATTTTTAATATGTTATATCAAAAATTCATAAATAATAATTGAAGTAATAATTATGTTGTGTAATACTGATATTTTAATGTAACACCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTTATCGTTTTCATTGTTTTGATTGCTTTGCACTTATTGCACTATATTGACCAAAATATGTTTATGTCATCAATAAA

Function

symbol description
slitrk5 Predicted to be involved in axonogenesis. Predicted to act upstream of or within several processes, including grooming behavior; nervous system development; and positive regulation of synapse assembly. Part of receptor complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_01693958_01696561.mRNA True 4382 mRNA 0.43 1 1692924 1697305

Neighbor

gene id symbol gene type direction distance location
CI01000299_01419938_01421048 NA coding downstream 271876 1419529 ~ 1421048 (-)
CI01000299_01338052_01368900 NA coding downstream 323548 1337872 ~ 1369376 (-)
CI01000299_01222994_01268707 NA coding downstream 422598 1222859 ~ 1270326 (-)
CI01000299_01114487_01122666 NA coding downstream 568694 1113750 ~ 1124230 (-)
CI01000299_01057889_01063623 NA coding downstream 629301 1057820 ~ 1063623 (-)
CI01000299_02670695_02682116 NA coding upstream 973291 2670596 ~ 2682116 (-)
CI01000299_02723315_02728716 MNX2B coding upstream 1025915 2723220 ~ 2728753 (-)
CI01000299_02761916_02788258 FN1B coding upstream 1064109 2761414 ~ 2788437 (-)
CI01000299_02833341_02845817 NA coding upstream 1135785 2833090 ~ 2845870 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding upstream 1152976 2850281 ~ 2876863 (-)
G404765 NA non-coding downstream 1643 1686047 ~ 1691281 (-)
G404778 NA non-coding downstream 56967 1635677 ~ 1635957 (-)
G404777 NA non-coding downstream 60588 1631896 ~ 1632336 (-)
G404772 NA non-coding downstream 87816 1604710 ~ 1605108 (-)
G404771 NA non-coding downstream 88296 1604300 ~ 1604628 (-)
G404800 NA non-coding upstream 8722 1706027 ~ 1706240 (-)
G405049 NA non-coding upstream 308871 2006176 ~ 2006729 (-)
G405051 NA non-coding upstream 319779 2017084 ~ 2017314 (-)
G405067 NA non-coding upstream 332300 2029605 ~ 2030051 (-)
G405068 NA non-coding upstream 332896 2030201 ~ 2030437 (-)
G404784 NA other downstream 32924 1659655 ~ 1660000 (-)
G404372 NA other downstream 617033 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 1020068 670680 ~ 673625 (-)
G404976 NA other upstream 158334 1855639 ~ 1880988 (-)
G405053 NA other upstream 320382 2017687 ~ 2018050 (-)
G407413 NA other upstream 2778689 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 3228663 4913373 ~ 4927715 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008950 slitrk5a coding NC_007126.7 CM002899.2 3089212 ~ 3096150 (-)
tiger barb (Puntius tetrazona) G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 unknown NC_056699.1 CM032068.1 3636707 ~ 3699093 (+)