Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000299_02696797_02704180 |
| gene name | TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 2696632 ~ 2704220 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| tuba1b | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in several structures, including ectoderm; integument; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human TUBA1B (tubulin alpha 1b). |
| tuba8l2 | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a). |
| tuba1c | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b). |
| tuba1a | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a). |
| tuba4a | Enables protein kinase binding activity. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in microtubule. Implicated in amyotrophic lateral sclerosis type 22. |
| tuba4b | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be active in cytoplasm and microtubule. |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| K07374 | TUBA; tubulin alpha |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000299_02696797_02704180.mRNA | True | 1732 | mRNA | 0.52 | 5 | 2696632 | 2704220 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_02612562_02613926 | NA | coding | upstream | 81840 | 2612499 ~ 2614792 (+) |
| CI01000299_02195854_02198465 | NA | coding | upstream | 497707 | 2195798 ~ 2198925 (+) |
| CI01000299_02118245_02120332 | SLITRK1 | coding | upstream | 574774 | 2116861 ~ 2121858 (+) |
| CI01000299_01855614_01858092 | SLITRK6 | coding | upstream | 837929 | 1855614 ~ 1858703 (+) |
| CI01000299_01197545_01215711 | NA | coding | upstream | 1480643 | 1197422 ~ 1215989 (+) |
| CI01000299_02706136_02711943 | STK16 | coding | downstream | 1653 | 2705873 ~ 2713740 (+) |
| CI01000299_02753238_02760499 | PUR9, ATIC | coding | downstream | 49018 | 2753238 ~ 2760953 (+) |
| CI01000299_02813216_02818668 | CPO | coding | downstream | 108921 | 2813141 ~ 2819096 (+) |
| CI01000299_03144958_03149338 | NA | coding | downstream | 440170 | 3144390 ~ 3149340 (+) |
| CI01000299_03157191_03166687 | ABCB6, ABCB6A | coding | downstream | 452971 | 3157191 ~ 3166701 (+) |
| G405366 | NA | non-coding | upstream | 41219 | 2655180 ~ 2655413 (+) |
| G405365 | NA | non-coding | upstream | 43016 | 2653406 ~ 2653616 (+) |
| G405364 | NA | non-coding | upstream | 43479 | 2652908 ~ 2653153 (+) |
| G405362 | NA | non-coding | upstream | 51779 | 2644549 ~ 2644853 (+) |
| G405361 | NA | non-coding | upstream | 52173 | 2644092 ~ 2644459 (+) |
| G405385 | NA | non-coding | downstream | 16642 | 2720862 ~ 2721324 (+) |
| G405390 | NA | non-coding | downstream | 26053 | 2730273 ~ 2730509 (+) |
| G405407 | NA | non-coding | downstream | 106232 | 2810452 ~ 2810672 (+) |
| G405611 | NA | non-coding | downstream | 504706 | 3208926 ~ 3209411 (+) |
| G405618 | NA | non-coding | downstream | 616304 | 3320524 ~ 3321012 (+) |
| G403972 | NA | other | upstream | 2090282 | 604870 ~ 606350 (+) |
| G403609 | NA | other | upstream | 2285844 | 364139 ~ 410788 (+) |
| G403578 | NA | other | upstream | 2624361 | 35462 ~ 72271 (+) |
| G405609 | NA | other | downstream | 450377 | 3154597 ~ 3155174 (+) |
| CI01000299_04131136_04133439 | PCNP | other | downstream | 1427038 | 4131060 ~ 4133941 (+) |
| G405842 | NA | other | downstream | 1591313 | 4295533 ~ 4320141 (+) |
| CI01000299_04480751_04492829 | NA | other | downstream | 1785598 | 4480553 ~ 4493116 (+) |
| CI01000299_04703290_04704365 | NA | other | downstream | 1998162 | 4703071 ~ 4704780 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00001311 | tuba8l2,LOC108411703,LOC103042625,LOC107750365 | coding | CM030137.1 | CM030137.1 | 24480969 ~ 24490636 (+) |
