CI01000299_02723315_02728716 (MNX2B)


Basic Information

Item Value
gene id CI01000299_02723315_02728716
gene name MNX2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2723220 ~ 2728753 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_02723315_02728716.mRNA
ACAGCTATCCAACTCCAAACAACCTAGAAGCGTCGCAATGGAAAAATCAAAGAACTTCAGGATCGACGCTCTTCTGGCTGAAGAACCCCATCGAGGGACACGAGAAGTATCACCTGGACTGAGCAGCGACAGCCCGACGGGTAGCCCGGTGTCCTGCAGGCGCGCCGACACTCCGTCCCCCCGCGGGACCCCCGGCGCCATACACCTCCAAACCGGAATCATACCTAAACCAGGGCTGCTCAATCTCCCACACCCGGGACTCACTTCAATTCCAGCCATGTACACGACGCCCATGTACCCCATTTCAGCTTTGGGAGGTCAGCACCCTGCCCTGGCGTACTCGGGCTTTACGCAGCTGACGCAGCCGTACCCGGAGCACCTGAAGGCGGCGGCGATGGCCGGATCTTTACCGCTGGAGCACTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCTCCGCCCCCCAGTCCGGTTTGATGGGTAAATGTCGTCGGCCACGGACAGCATTCACCAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTGAACAAGTACCTTTCCAGGCCCAAACGCTTCGAAGTGGCTACATCTCTCATGCTGACTGAGACACAGGTCAAGATCTGGTTCCAGAACCGGCGAATGAAGTGGAAACGCAGTCGCAAGGCTAAAGAACAGGCCGCGCAGGTCGAGGTTGAACGCCAACGTGGCGGGACCAAATCGACCAATGAGAGGCCAGGAAGGGACGGCCGCAGGGCTCACGCTCAGAGTGTGGAGGAGCACGAGGAAGAGGACGATCTTGACGAGGACGATGAAGAAGATGAGGAGGAAGGGCCACACAAGTTTATAAACGACAACCTAAATATACCACGTTCCACAGACTTTCTGCACCACACATCTGCGTTAGGATACCACGCTGACAGCCCGTTCTCTGAGGACGACATGGAGGAGGTGGGAGCCGGCGATAGGAAGATTGGGGCAGGGTTATGAAAAGATTTCCAAATGGAAACTGAGACTGCATGAACTCACAGCAGCATTACAGTCCTGTGCTGTGGTTTGACTATGGCAACAGTAAGATGAAAAAA

Function

symbol description
mnx2b Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including endodermal cell; lateral mesoderm; motor neurons; spinal cord; and spinal cord neural tube.

GO:

id name namespace
GO:0021520 spinal cord motor neuron cell fate specification biological_process

KEGG:

id description
K08025 HLXB9, HB9; homeobox protein HB9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_02723315_02728716.mRNA True 1098 mRNA 0.55 3 2723220 2728753

Neighbor

gene id symbol gene type direction distance location
CI01000299_02670695_02682116 NA coding downstream 41104 2670596 ~ 2682116 (-)
CI01000299_01693958_01696561 SLITRK5 coding downstream 1025915 1692924 ~ 1697305 (-)
CI01000299_01419938_01421048 NA coding downstream 1302172 1419529 ~ 1421048 (-)
CI01000299_01338052_01368900 NA coding downstream 1353844 1337872 ~ 1369376 (-)
CI01000299_01222994_01268707 NA coding downstream 1452894 1222859 ~ 1270326 (-)
CI01000299_02761916_02788258 FN1B coding upstream 32661 2761414 ~ 2788437 (-)
CI01000299_02833341_02845817 NA coding upstream 104337 2833090 ~ 2845870 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding upstream 121528 2850281 ~ 2876863 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding upstream 162821 2891574 ~ 2905146 (-)
CI01000299_02951402_03057288 PARD3BA coding upstream 222649 2951402 ~ 3057288 (-)
G406772 NA non-coding downstream 2672 2720213 ~ 2720548 (-)
G406630 NA non-coding downstream 16528 2705521 ~ 2706692 (-)
G406715 NA non-coding downstream 191212 2531792 ~ 2532008 (-)
G406551 NA non-coding downstream 627864 2095043 ~ 2095356 (-)
G406539 NA non-coding downstream 665334 2057670 ~ 2057886 (-)
G406779 NA non-coding upstream 100464 2829217 ~ 2829455 (-)
G406786 NA non-coding upstream 192557 2921310 ~ 2922385 (-)
G406790 NA non-coding upstream 200587 2929340 ~ 2929549 (-)
G406842 NA non-coding upstream 328953 3057706 ~ 3058006 (-)
G406868 NA non-coding upstream 392244 3120997 ~ 3121253 (-)
G405053 NA other downstream 705170 2017687 ~ 2018050 (-)
G404976 NA other downstream 842232 1855639 ~ 1880988 (-)
G404784 NA other downstream 1063220 1659655 ~ 1660000 (-)
G404372 NA other downstream 1647329 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2050364 670680 ~ 673625 (-)
G407413 NA other upstream 1747241 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 2197215 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2712584 5427661 ~ 5443433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000964 mnx2b coding NC_007112.7 CM002885.2 5449777 ~ 5455502 (-)
bowfin (Amia calva) AMCG00001314 NA coding CM030137.1 CM030137.1 24568365 ~ 24576371 (+)