Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000299_02761916_02788258 |
| gene name | FN1B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 2761414 ~ 2788437 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| fn1b | Predicted to enable integrin binding activity and proteoglycan binding activity. Acts upstream of or within atrioventricular valve morphogenesis; heart field specification; and somitogenesis. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including fin; integument; mesoderm; musculature system; and periderm. Human ortholog(s) of this gene implicated in calcium oxalate nephrolithiasis; membranoproliferative glomerulonephritis; and spondylometaphyseal dysplasia corner fracture type. Orthologous to human FN1 (fibronectin 1). |
| id | name | namespace |
|---|---|---|
| GO:0003128 | heart field specification | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000299_02761916_02788258.mRNA | True | 7884 | mRNA | 0.50 | 45 | 2761414 | 2788437 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_02723315_02728716 | MNX2B | coding | downstream | 32661 | 2723220 ~ 2728753 (-) |
| CI01000299_02670695_02682116 | NA | coding | downstream | 79298 | 2670596 ~ 2682116 (-) |
| CI01000299_01693958_01696561 | SLITRK5 | coding | downstream | 1064109 | 1692924 ~ 1697305 (-) |
| CI01000299_01419938_01421048 | NA | coding | downstream | 1340366 | 1419529 ~ 1421048 (-) |
| CI01000299_01338052_01368900 | NA | coding | downstream | 1392038 | 1337872 ~ 1369376 (-) |
| CI01000299_02833341_02845817 | NA | coding | upstream | 44653 | 2833090 ~ 2845870 (-) |
| CI01000299_02850281_02876863 | NRP2A, NRP2 | coding | upstream | 61844 | 2850281 ~ 2876863 (-) |
| CI01000299_02891830_02905146 | NRP2B, NRP2A, NRP2 | coding | upstream | 103137 | 2891574 ~ 2905146 (-) |
| CI01000299_02951402_03057288 | PARD3BA | coding | upstream | 162965 | 2951402 ~ 3057288 (-) |
| CI01000299_03104921_03106385 | NA | coding | upstream | 316168 | 3104605 ~ 3106385 (-) |
| G406772 | NA | non-coding | downstream | 40866 | 2720213 ~ 2720548 (-) |
| G406630 | NA | non-coding | downstream | 54722 | 2705521 ~ 2706692 (-) |
| G406715 | NA | non-coding | downstream | 229406 | 2531792 ~ 2532008 (-) |
| G406551 | NA | non-coding | downstream | 666058 | 2095043 ~ 2095356 (-) |
| G406539 | NA | non-coding | downstream | 703528 | 2057670 ~ 2057886 (-) |
| G406779 | NA | non-coding | upstream | 40780 | 2829217 ~ 2829455 (-) |
| G406786 | NA | non-coding | upstream | 132873 | 2921310 ~ 2922385 (-) |
| G406790 | NA | non-coding | upstream | 140903 | 2929340 ~ 2929549 (-) |
| G406842 | NA | non-coding | upstream | 269269 | 3057706 ~ 3058006 (-) |
| G406868 | NA | non-coding | upstream | 332560 | 3120997 ~ 3121253 (-) |
| G405053 | NA | other | downstream | 743364 | 2017687 ~ 2018050 (-) |
| G404976 | NA | other | downstream | 880426 | 1855639 ~ 1880988 (-) |
| G404784 | NA | other | downstream | 1101414 | 1659655 ~ 1660000 (-) |
| G404372 | NA | other | downstream | 1685523 | 1070607 ~ 1075891 (-) |
| CI01000299_00670925_00672195 | NA | other | downstream | 2088558 | 670680 ~ 673625 (-) |
| G407413 | NA | other | upstream | 1687557 | 4475994 ~ 4550721 (-) |
| CI01000299_04913779_04927715 | NA | other | upstream | 2137531 | 4913373 ~ 4927715 (-) |
| CI01000299_05428160_05443433 | APP, APPA | other | upstream | 2652900 | 5427661 ~ 5443433 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
