CI01000299_02951402_03057288 (PARD3BA)


Basic Information

Item Value
gene id CI01000299_02951402_03057288
gene name PARD3BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2951402 ~ 3057288 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_02951402_03057288.mRNA
AGTCTCACACGGACGGTGGAGATTTCTGGAGACCTCGGGCCTCTGGGAATCAAAGTCATATCATACTGCTCCTCACTGAGTGGAAGGACTCTGGGTCTACATATCCGATCCATCGAGGAGAACAGCCGCTCTGAACGAGAGAGGATCTTTCAAGAGGACGAGTGCATTGTGCTGATCAATGACATCGAGCTAATAGACAAGTCCTTCGCTCAGTCTCAGGAGGTGTTTCGCCAAGCCATGTCCTCCTCCACTGTACGTTTGGAGGTGCTTCCTGTTGCCAACAAGCTCCGCTACGAAAAGAGCCTTATCGGGCAGCTTTTCAACAACACCGAACCAACCACTGTGGTCCCTAAAGTCAAGAGTCCTTTCTTGGTCCATAAACTGCGTCCGAGTAATGCATCAACGCCATCTCCAGAGCCCCCTGCCTCACAAACCCCGCCCCTTAAGGAGGAGGAGCTTCGACCTGCAAGACACCCCCCCGCTGAATCAAATCATCGCAGACATACGCCTTCTCCTCCTGTCAGCGCATCACCCACCCTGAAAGATCGTAGTGAGAGCCCCGCCCCCAAAAAGACCCCGGCCCTCGCCATGGCGGTTGATATGATCAACAAAAGGCCTGGGAAGAAAATGAAGATCGATTTGAAGAAAGGCACGGAGGGCCTCGGTTTCACCGTGGTAACCAGAGACTCGTCCCTTCATGGTCCAGGACCCATTATGGTCAAGAGCATTCTGCCCCGCGGAGCTGCTGTTAAAGACGGGCGGCTCAAGTCTGGAGACCGTATCCTGGAGGTAAATGGAGTGGACATCACAGGACGCACACAAGAGGAACTGGTGGCTATGCTGCGGAGCACCAAACTGGGAGAGACTGTGTCTATGATAGTTGGAAGACAAGAGGAGTTTTTGCCCAGAGAACTGAAAGGAGAGCCGTCAGGTCCGCTGCTGGCTGAGGACGGGCGAGAGCAGCTGATGTTTGAAGTTCCTTTGAACGACTCCGGCTCAGCTGGTCTGGGGGTCAGTCTGAAGGGTAACAAGTCCCGAGAGACCGGAGAAGACCTGGGCATCTTCATCAAGTCCATCATCCACGGCGGCGCTGCACACAAGGACGGTCGCTTACGGATCAATGATCAGCTGGTAGCCGTCAACAGTGAATCCCTGCTCGGACGCTCCAACCACGATGCCATGGAAACCCTGCGGTACTCCATGTCGACTGAAGGGAACCTCAGAGGAACCATCCAGCTGGTGGTTCTGCGTACTGTGGAGCGCTCACCTGCACAGGAAAATCAGGAAACCAGTCAGACTGTCTCTAGAAACGACTCTCCTGTTCATCATCATCCTAACAACAACCACACCAACAGTTCCATACCACCATCCACAGCGAACAACCGTATGTACGAAGCTGCTCCTGCTCCACACAGATCCTATGGGGAGAGACAGGAACTGCCGGAGGAGGACTATGATGAAGACGATTTCCCCCCTCCACCTTCTGATCAGGACCTGCTGGAAACAGACCCTCCTCACAAACACCAACAAGATCGGGCTGAAATGGAGCCTGTCTCCTATGTGAACCACCCCACCAACCAACAATACCCTCAACAACAGAAAGTCCCAGATTACCCCACCAACAGGTCCTCAAAGAGCATGGATTTAGTGGCAGATGAGAGTAACATGGCCTCCATTCAAGGACAGAGACCTGAACCCCCCTCCTCTAACGGGACAGCGCTGGGACCCAGGTTAGGTCTTCAGAAGTCCAGTTCTCTGGAGAGTCTCCAGACAGCGATGGAGGAGGTCAGTAAGGACGAGGTGCCCTTCCATCGTCCACGGGCGCACATGGTGAGAGGCAGAGGCTGCAACCTCAGCTTCCGCTACGCCATCGACAAGTCCTACGAAGGGCCTTCTGAACCTGAGGATGTCACCAATTATCAAAACATAACACATCCTCTCTTTGTCTCTGTGTGTCCGTGCTCTTTCTCTCTCTCTCTCCTCGCTTTCTTCAAACCCTCATCCAGGTTTGGGAGGAAAAACAAAGAGGAGAAAGCCAAATCTAAGGCTAAACAACTGGGCGCTTTGAGCGAAGAGGAGATGGACAGGAGTGAACCGGAGATGTTTCTGTCCAAGAGTGAAAGGAACAGCCCTGCTCCTGACCGTGTCATCTTCCCGGACGTCGAAGATGATGACATGGATCCCAACTATGCTCGCATCAGCAATTTCAGAGAACCTCCTGCCTCCAGTCACTCCCCCTATCCACCTGGAACTCCCACCCATAACCACTCTCAGCCTTCTGTCCCCGCCCCAAACAGAGAGCCGCCCAATGAGGACGAGCTAGAGGGGCTTTATGCAAAAGTGAACAAGCAAAGAACCGCCCCTCCAAAGACTGACAGTAATGAAGAACGATTGCAGCAAATCCGAAATCAGCTTCAAAAGGTGAGACCAGCTCCATCCTATGAAGACCTGACCGCCCGAAGACGCCAGGAATACGACCCCTCACGAATCAGAGGGCCTGATCCACGAATGGCTCCAAGATACAACGACACCGATCGTCTGTATGCCTCCGTGCCCAGGAGGATGCCCGTGGAGGACTACCCGAACCAGAACTGGTCCAGCCAGAGAGACCTCGTCCATTACTCAAACCCCATCTACGAGACCCATCGAGACAACTACCCTTCACGCTCTCCACGGTTGCCCGTACCCAGACCCATGGAGGCCACGGGCAGTGACTACCCTTCACCTCCAGTGCAACAGAGGGGTCCCATAAGGCAGGATGTCCCTCCCTCGTCGAACCCAGGTGCCAGAGGACCACCGCGTTATGAAACGCTAAACCAGGGGAACTATCGGACGCCCAGTCCTGATCGCTATGGGCCATACGGAGATGAACAATATCAAGACCCCCGGCAGAAAAACCCAATCGGAGCTGTC

Function

symbol description
pard3ba Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Is expressed in several structures, including EVL; intermediate cell mass of mesoderm; periderm; sensory system; and tegmentum. Orthologous to human PARD3B (par-3 family cell polarity regulator beta).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_02951402_03057288.mRNA True 2913 mRNA 0.54 17 2951402 3057288

Neighbor

gene id symbol gene type direction distance location
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 46256 2891574 ~ 2905146 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding downstream 74539 2850281 ~ 2876863 (-)
CI01000299_02833341_02845817 NA coding downstream 105532 2833090 ~ 2845870 (-)
CI01000299_02761916_02788258 FN1B coding downstream 162965 2761414 ~ 2788437 (-)
CI01000299_02723315_02728716 MNX2B coding downstream 222649 2723220 ~ 2728753 (-)
CI01000299_03104921_03106385 NA coding upstream 47317 3104605 ~ 3106385 (-)
CI01000299_03206204_03214303 MDH1B coding upstream 148897 3206185 ~ 3214303 (-)
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding upstream 283478 3340766 ~ 3366728 (-)
CI01000299_03492360_03492614 NA coding upstream 434926 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 1077532 4134820 ~ 4142125 (-)
G406790 NA non-coding downstream 21853 2929340 ~ 2929549 (-)
G406786 NA non-coding downstream 29017 2921310 ~ 2922385 (-)
G406779 NA non-coding downstream 121947 2829217 ~ 2829455 (-)
G406772 NA non-coding downstream 230854 2720213 ~ 2720548 (-)
G406630 NA non-coding downstream 244710 2705521 ~ 2706692 (-)
G406842 NA non-coding upstream 418 3057706 ~ 3058006 (-)
G406868 NA non-coding upstream 63709 3120997 ~ 3121253 (-)
G406884 NA non-coding upstream 97312 3154600 ~ 3155118 (-)
G406858 NA non-coding upstream 101108 3158396 ~ 3204366 (-)
G406889 NA non-coding upstream 109243 3166531 ~ 3169255 (-)
G405053 NA other downstream 933352 2017687 ~ 2018050 (-)
G404976 NA other downstream 1070414 1855639 ~ 1880988 (-)
G404784 NA other downstream 1291402 1659655 ~ 1660000 (-)
G404372 NA other downstream 1875511 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2278546 670680 ~ 673625 (-)
G407413 NA other upstream 1418706 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1868680 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2384049 5427661 ~ 5443433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location