CI01000299_03157191_03166687 (ABCB6, ABCB6A)


Basic Information

Item Value
gene id CI01000299_03157191_03166687
gene name ABCB6, ABCB6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3157191 ~ 3166701 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_03157191_03166687.mRNA
ATGGTGGAGATGAAGAGTTACTGTGAAGCCGGAGTCTCCATGCAGCAGGTCTGGGTGGAGGGCGGTCTGACCCTCTGCTTCTACTTCACCCTGGTGCCGTCCATCCTCCTCACCCTCTCCTTCCTCTTCGGCACGTTCCTGTGTATATGCTACGGCCGCTATGGCACAGACATGGAGCCCAAGTTTATCCCTCGCTCCCGACTGTACCGGCTCCAAGTGGGCCTGTCGGTGTTGCTCGCCTTGCTGGCTCTGGGCTGGATGGTGTTTCGGATCGCTCGGAGCGGAGAGCTGCCGGGATACGTGATTCTGTACGGCTGTCTCTCCATGCTGGGCTGGCTTTGGGCTGTGGCTCTGCTGCGTCTGGAGAGAAAGAGGGTTCTGGTGCGGGACAGAACCAGAGGACACAGTACGGTACTATTGCTGTACTGGGCCGTGGCTTTTGCGGCAGAAAACCTGGCGTTTGTGTCGTGGGTGAGCCCTCAGTGGTGGTGGACTCTGGACACATTCGATCAACAGATAGAGTTTGCTTTCTGGCTGGTGCGGTACTTCAGCTCAGGTTTGCTGTTCCTGTTAGGCCTCAAAGCTCCAGGATTGCCTAGCCGACCGTACATGCTTCTGGTCAATGAAGATGAGCGAGATGTTGAGCATGGAGCACCTCTCTTGGGTAATTCTGACGAGAATCAGTCCACGTGGAAAGACTTTAGGCAGAAGGTGCGTCTGTTGGTGCCGTACATGTGGCCTAAAGGCAATGTCGTGCTTCAGCTGCTGGTTCTGCTGTGTCTCGGGCTGCTGGGAGTGGAACGTGTCATCAATGTGTTTGTGCCCATCTACTACAAGAACATAGTGAACCAGCTGACAGATGGGAGCTCTTGGAAGACTCTGGCGACTACAGTGTGTCTTTATGGGCTCCTGAAGTTCCTGCAGGGTGGTGGAGCTGGTGAGGGAACATCACTTAATTTAATGATATCTTTGATGTGGATTATCGGTTTGAATCTGACCACAATCTCATCTTCATCTGCAGGTGCGTCTGGGTTTGTGAGTAACATGCGTTCGTTCCTGTGGATTCGAGTGCAGCAGTACACTAACCGTGTGGTCCAGGTGCGTCTCTTTGCTCACCTGCACTCTCTGTCTCTGCGCTGGCACCTGGGCCGCCGCACCGGAGACGTCCTGAGAAGCATCGACAGAGGAACCTCCTCCATCAACAGCCTGCTGAGCTATATCGTGTTCAGCATCTTGCCCACCATCGCTGACATTGTCATCGCCATTATCTATTTTATATCCAATTTCAATGCCTGGTTTGGCCTCATAGTCTTCGTTTGTATGGCCCTCTACCTCACTCTCACCATCGTTATCACTGAATGGAGAACTAAATACAGACGAGATATGAACACACAAGATAACAATGCCAAATCGAAAGCTGTGGACTCTTTATTGAACTTTGAGACGGTGAAATATTACAATGCAGAGAGTTATGAAGCAAATCGCTTTGAGGATGCCATCCTGAAATATCAGGTATCGGAATGGAAGACCAACGCGTCTCTGGCGTTTTTAAATCAAACGCAGAACCTCATCATCGGTTTGGGTCTGCTGACCGGATCTCTGCTCTGTGCGTACTTCGTGACAGAGGGGAAGTTTCAGGTCGGAGATTATGTGCTGTTTGGAACATACATCATCCAGCTCTACACTCCTCTCAACTGGTTTGGAACATACTACAGAATGATCCAGAGCTCCTTCATCGATATGGAAAGCATGTTCAAGCTCTTCACTGAGGAGGAGGAAGTGAAGGATGATGTCAATGCAGGAAACCTCAACTTCAGGCAGGGAAAAGTAGAATTTGAGAATGTCTTCTTCAGCTACACGCAAGGCAAAGAAATTCTAAAAGATGTCTCTTTTACTGTACTTCCCGGACAGACGGTCGCACTTGTTGGACAGTCTGGATCAGGAAAGAGCACCATCATCCGTCTGCTTTTCCGTTTTTATGACGTACAGGGCGGGTGTATAAAAATAGACGGTCAAGACATCTCAAAGGTGAAGCAGACCTCTCTGCGCGCTCACATTGGTGTCGTCCCTCAGGACACTGTCCTGTTTAATGACAATATTCGGGACAACATCCGTTACGGTCGAGTTGCTGCTACTGACCAAGAGGTGGAGGAGGCTGCGATTGCCGCTGACATCCATGACAAAATCGTAACTTTCCCAGACGGCTATGACACTCAGGTGGGTGAGAGGGGGCTGAAGTTGAGTGGAGGAGAGAAGCAGAGAGTCGCCATCGCTCGCACCATCCTCAAAGCTCCACAAATCATCCTTCTTGATGAGGCCACGTCTGCTCTAGACACACAGACTGAGCGAAATATTCAGGCATCGCTGGCTAAAATCTGCACCAACAGAACCTCCATTGTGGTGGCACACAGATTGTCGACTGTCATTGGAGCTGACGTGATTCTTGTACTTCTTGATGGGCAGATTGTGGAGAGAGGAAGGCACGAGGAGCTGTTGGCGAAGGGAGGGCTGTACTCTGACATGTGGCAGAAACAGCAGCAGGTTCAGGATTCAGACTCGGCCTCTGACAGCGAGACTAAAGACAGGAAATCAGAGAAACTACAGCCACAAACATCCACTACAGGACACAAGGGACACTAGATACATGATGGGAC

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6 Enables several functions, including ABC-type heme transporter activity; ATP binding activity; and heme binding activity. Involved in several processes, including cellular detoxification of cadmium ion; melanosome assembly; and porphyrin-containing compound metabolic process. Located in several cellular components, including Golgi apparatus; bounding membrane of organelle; and extracellular exosome. Is integral component of mitochondrial outer membrane. Implicated in dyschromatosis universalis hereditaria.

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05661 ABCB6; ATP-binding cassette, subfamily B (MDR/TAP), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_03157191_03166687.mRNA True 2654 mRNA 0.51 18 3157191 3166701

Neighbor

gene id symbol gene type direction distance location
CI01000299_03144958_03149338 NA coding upstream 7851 3144390 ~ 3149340 (+)
CI01000299_02813216_02818668 CPO coding upstream 338095 2813141 ~ 2819096 (+)
CI01000299_02753238_02760499 PUR9, ATIC coding upstream 396238 2753238 ~ 2760953 (+)
CI01000299_02706136_02711943 STK16 coding upstream 443451 2705873 ~ 2713740 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding upstream 452971 2696632 ~ 2704220 (+)
CI01000299_03170577_03174986 CNPPD1 coding downstream 3876 3170577 ~ 3175003 (+)
CI01000299_03176677_03185710 PRKAG3A coding downstream 9976 3176677 ~ 3186067 (+)
CI01000299_03189537_03200831 FAM134A coding downstream 22618 3189319 ~ 3201406 (+)
CI01000299_03215678_03230586 NA coding downstream 48977 3215678 ~ 3230586 (+)
CI01000299_03237334_03244737 GTF3C3 coding downstream 70633 3237334 ~ 3244815 (+)
G405407 NA non-coding upstream 346519 2810452 ~ 2810672 (+)
G405390 NA non-coding upstream 426682 2730273 ~ 2730509 (+)
G405385 NA non-coding upstream 435867 2720862 ~ 2721324 (+)
G405329 NA non-coding upstream 442050 2659354 ~ 2715141 (+)
G405366 NA non-coding upstream 501778 2655180 ~ 2655413 (+)
G405611 NA non-coding downstream 42225 3208926 ~ 3209411 (+)
G405618 NA non-coding downstream 153823 3320524 ~ 3321012 (+)
G405619 NA non-coding downstream 154494 3321195 ~ 3321433 (+)
G405621 NA non-coding downstream 167526 3334227 ~ 3335205 (+)
G405660 NA non-coding downstream 239884 3406585 ~ 3406810 (+)
G405609 NA other upstream 2017 3154597 ~ 3155174 (+)
G403972 NA other upstream 2550841 604870 ~ 606350 (+)
G403609 NA other upstream 2746403 364139 ~ 410788 (+)
G403578 NA other upstream 3084920 35462 ~ 72271 (+)
CI01000299_04131136_04133439 PCNP other downstream 964557 4131060 ~ 4133941 (+)
G405842 NA other downstream 1128832 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1323117 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1535681 4703071 ~ 4704780 (+)
G406096 NA other downstream 1757761 4924462 ~ 4927844 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location