CI01000299_03189537_03200831 (FAM134A)


Basic Information

Item Value
gene id CI01000299_03189537_03200831
gene name FAM134A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3189319 ~ 3201406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_03189537_03200831.mRNA
ATATAAATGTCAAGTTCAATCACAAAAAAAAGTATTTTTGTGTTTGTGCTGCAGCCAGCAGATGTCACCCACGGGCGCAGTAAACACTGAACATGTGACACTGTAAGAGCCTGTAAGATCCACAGTGTGTTTCTGTTTTTTCTAATAATCCATGACGAGCCTCTCCTGACCAAACCCCGTCATCAACAACACACACAAACAACACTGGACAAGTCACAATGGCGAGCAGACGGGCCTCGGTGTCTTCCTCATCGGCGGGTCTGGAGGCCTGGTTCCCCGCGCCCGGCAGCGGGGAGGATGAGCCGGAGCTGCGGCGGCTGCGGGAGCGGCTGCGCGGGTGGCTGTCGCAGTGCGAGCCCGCGGTGATCTACGCGCAGCGGCTGCTGGTGTGGGAGAGGCCGCTGCACAGCATCATCGCCGCGCTCGCGCTCAACACGCTGTTTTGGCTCCTGTCGTCCACATCTTTGAGACCTCTGTTCCTCCTGAGCGTGTCTCTCATTGGACTGACTCTACTGGAGAGATGGAAAGACAAGCTGCCACAGATCACTGTGTGGCATCCAGAGGCGTCTGTCATTGAGCGAGAAACACTAACTGATCAGCCACGTCTGTTAAGCGTGGAGGAACTCAGCCATCATCTCGCCGAGAGTTACCTCACCTTCAGCCTGTACATCCAAGAAATGCTTCAGTACAAACGACAAAACCACGGCAAGTTCTGCATCATGATGTGTTCAGGATGTTTAATGCTGGCCCTGGTTGGACATTACATTCCTGGGATTATGATCTCCTACATCATATTGCTGAGTGTGCTGCTGTGGCCGCTGGTGGTCTACCATGAGCTGATCCAGAAAATGTACACCGGGCTGGAGCCCATACTGATGAAACTCGACTACAGCATGAAAGGAGACACACAACGCCGCAAATACGACAAGAGAAAGCTGAAGAAGGAGCAGGAAGAGGGTGACGAGCCGAGGGCAGAGACGGAGAGCGAGAGTGAGGAGGAGCTGTCCTGTTTCGCTCCCACTGTGGATGTGAAGACTACGGCTCTGGCGATGGCCATCACAGACTCTGAGCTGTCCGATGAGGAGGCGTCCATCCTGGAGAGTGGAGGATTCTCTGTGTCCAGAGCCACAACACCACAGCTCACAGACGTCTCTGAAGCAGACCTGGATCAGCAGAGCGTACACAGTGAACCGGAGGAGGCGTTCACTAGAGACCTAGCGGAGTTTCCTTCAGTGGACGAGATGCCTTCTATTGAACCGGGTCTGTTCCATTTCCCGTTGGGCGTTCTCGGGTCTGAGCAGGCGGGAGCTTCTGGCTCCGATCTCCAGGAGGAAGCCCTGTCTCCGGCCAGCCTCCTCATTCAGCACTTAGCATCTCCCCTCCACTTTGTCAACACACACTTCAATGGACACGGACAAGCGGCGGGGGCAGACCAAAGCATTGTGGGTACTGAGAAAGCGGGAAGAGTATCAAAACCCGCTAGATCCCTGGAAGCCCTCAGCGAGGAGATAGTGAGCACGGCCATCTCAACCGTAGTACAGAACACTCTCTCAGCCCTGTTGCGGTCTACGGAGGCCAGCGAAGGCTCATCCATGGCTTCGTTCCTTCCCACCGAAACGCCTCCTTGCCCGATGGAATCGCCCCTCGAGTTGCCGTCCACCCAAGAAGCCAGCGCAGAGGAAGAGGACGCTGACGTCACCGAAGCAAGCACCGAAGAGCAGCCGGATGTGACGCTCGTACCCACGGAAGAAGAGGACTTTGAGCTACTGGACCAAAGCGAACTGGAACAGATGGATGAGGGGTTGGGCCTGGATGTTGATGGACAGGAAGTGGGCGGGGCTTCCACAGACACACCCCCAAGCAGTCAGCAGCATGCAGACCAGCAGGATTCCTAGCTTCCCATCATCTAAACTGTTTATTTTATTTATAGTCCATGTAGATACCATAACTGACATATGATTTGTGAAAGGGAATGTCGCAGTCAACTATGCCTTTCTTGTTGTTTTCGGCAGTGAGATCACTGTGATTGTTGGTGTATGTCGCAAAATGTATGACACAAATCCTAACCTGCGATGGTTATAAGGTTTTTTGACCGATCCAAATGACCTAAAAATCAAGCCATTCAGATTTCAAAAGCGACTTAAAATAGACGTACAAGATTGAATCGTTTATTGTATGTATATTTTGACAAGAGCCTTCTGGTTTATTAATCCCACGCTGACCGTTTTCATAGGGTTTAATGCATCATGGGAACAAGCCATGTGGGCCGAGTTTTATTTGCTTGTAGGGCTGGTAGGTTTTGTGTGGAAGGAGAGGCTGAGCAGGACACGACTGCAAATTCTCAACGCAGATTTCTTTTCATAAGAATAACTAAACTAATATATACTATATTATATACCTATGAAGTGGATGGTCTTATTTATTAAAATTGGTTAGAGTGAAGAATGGTTTACTATTAAATATGTCTCGA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_03189537_03200831.mRNA True 2470 mRNA 0.51 9 3189319 3201406

Neighbor

gene id symbol gene type direction distance location
CI01000299_03176677_03185710 PRKAG3A coding upstream 3252 3176677 ~ 3186067 (+)
CI01000299_03170577_03174986 CNPPD1 coding upstream 14316 3170577 ~ 3175003 (+)
CI01000299_03157191_03166687 ABCB6, ABCB6A coding upstream 22618 3157191 ~ 3166701 (+)
CI01000299_03144958_03149338 NA coding upstream 39979 3144390 ~ 3149340 (+)
CI01000299_02813216_02818668 CPO coding upstream 370223 2813141 ~ 2819096 (+)
CI01000299_03215678_03230586 NA coding downstream 14272 3215678 ~ 3230586 (+)
CI01000299_03237334_03244737 GTF3C3 coding downstream 35928 3237334 ~ 3244815 (+)
CI01000299_03267154_03267336 NA coding downstream 65748 3267154 ~ 3267391 (+)
CI01000299_03268500_03312490 HECW2 coding downstream 66787 3268193 ~ 3313328 (+)
CI01000299_03366963_03373293 NA coding downstream 165412 3366818 ~ 3373682 (+)
G405407 NA non-coding upstream 378647 2810452 ~ 2810672 (+)
G405390 NA non-coding upstream 458810 2730273 ~ 2730509 (+)
G405385 NA non-coding upstream 467995 2720862 ~ 2721324 (+)
G405329 NA non-coding upstream 474178 2659354 ~ 2715141 (+)
G405366 NA non-coding upstream 533906 2655180 ~ 2655413 (+)
G405611 NA non-coding downstream 7520 3208926 ~ 3209411 (+)
G405618 NA non-coding downstream 119118 3320524 ~ 3321012 (+)
G405619 NA non-coding downstream 119789 3321195 ~ 3321433 (+)
G405621 NA non-coding downstream 132821 3334227 ~ 3335205 (+)
G405660 NA non-coding downstream 205179 3406585 ~ 3406810 (+)
G405609 NA other upstream 34145 3154597 ~ 3155174 (+)
G403972 NA other upstream 2582969 604870 ~ 606350 (+)
G403609 NA other upstream 2778531 364139 ~ 410788 (+)
G403578 NA other upstream 3117048 35462 ~ 72271 (+)
CI01000299_04131136_04133439 PCNP other downstream 929852 4131060 ~ 4133941 (+)
G405842 NA other downstream 1094127 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1288412 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1500976 4703071 ~ 4704780 (+)
G406096 NA other downstream 1723056 4924462 ~ 4927844 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001244 NA coding CM030137.1 CM030137.1 21166972 ~ 21177803 (-)