CI01000299_03206204_03214303 (MDH1B)


Basic Information

Item Value
gene id CI01000299_03206204_03214303
gene name MDH1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3206185 ~ 3214303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_03206204_03214303.mRNA
TGAAATGCTCTCAAATGCATCCAACAGGGTCACAGGAAAAGCAGATTGTCCTCATTACGCAAAAGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGAATGGAAGATATGGCTGGAGGACACCTGCGCATCAAATGGATGGACACATTCAAGCTCTCCTATAGTATGGAGGGAGCTGATTGATCGTGGGGGTAAAGGAATGCTGATCGGAGGCTTCAGTGATTTCCTTGAGCATGCTCAGGGTTACTATGGCATCACCTCAGATATGAACTCTGATCTGATGCTAAAAATTGCAGTAGAGAATCACCAAACTAAAGAGCTGTGTATGAAGGAGGAAGTCCACCGACACGTGTCTCTCAGACCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCATCTGCTACAGCCTCATCCCTCAGTTGTTCACCCCGGGACTGTTTCCAGGTCTCCCCCTTTTCAGCCTTCACCTCATGGACACCTGCGGCTCTGAGGAAATGTTACGAGGACTCAAGATGGAAACGGAAGACCTCGCCCTACCTCAGCTCCATGAGGTCACTGTCCATTCAGACCAGACACAGGCGTTTCAGGAAGCCCACTTCATCATCTTTCTGGATGACCTGCAGCCTATATGTGAAAGTAACGATGAGCCGGATGACAAGGACCACATGGTGAGCCGGGTTGCAGAATGTTTCTGTTGCTATGGGCAACTCATCGAGGCGAATGCACGGAAAGACGTACGAGTGATCGTGGCGGGAGACTCCTTTATTAATCTGAAGTGCTCGCTGTTAATTGAGAACGCACCCTCTGTTGACCCGCACAACTTTGTGGCGATGACAACGCAGCTGGAATGCGAGGCAAGAACTCAGCTTGCGCAGAAGTTGTCGGTAAAAACAGCAGACATGACTAATGTTATTGTATGGGGAAACATCAGTGGCAGTTACCATATTGACCTGCAGAGGGCGAAGGTTTTCAGATATGATGGCGCAATTTGGGGACCAGATGGTTTTTCTCAGCGAGTCATGGAAATGATTTATGATTGGAAATGGCTGGAGACAGATTTTATGACTTTAGTACATAAACATCGTGCCACAATTTCGTCAATGACCAACAAAGCCACAGCAATATCATCAACCAATGGAATAATGAGCATTTTAAGGGCCTGGAATAATGAATCTTCTCCAGAGGAAGTTTTCTCATTGGGTGTACTTAGTACAGGCAAGATCATTCAAATCATCCTCAAACATGAAATAAATATGGCTTACAGGCAGTTTGGGATTCCAGCAGGTTTGGTGTTTTCTATGCCTGTGAGCTTCAGGAATGGTCTCTGGTCAGTGCGGTCAGACATTACTGTTACAGATGAGTTGAGGGTAAAACTTGATGCTTGTGCTGATGAACTTAAAATGGTGGCCTCAACAAACTTCCAAAGGGGCTGGAGGATGTCCTAAAAGTATTTAAATTAATAAA

Function

symbol description
mdh1b Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

GO:

id name namespace
GO:0004033 aldo-keto reductase (NADP) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_03206204_03214303.mRNA True 1508 mRNA 0.46 9 3206185 3214303

Neighbor

gene id symbol gene type direction distance location
CI01000299_03104921_03106385 NA coding downstream 99800 3104605 ~ 3106385 (-)
CI01000299_02951402_03057288 PARD3BA coding downstream 148897 2951402 ~ 3057288 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 301039 2891574 ~ 2905146 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding downstream 329322 2850281 ~ 2876863 (-)
CI01000299_02833341_02845817 NA coding downstream 360315 2833090 ~ 2845870 (-)
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding upstream 126463 3340766 ~ 3366728 (-)
CI01000299_03492360_03492614 NA coding upstream 277911 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 920517 4134820 ~ 4142125 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding upstream 943698 4158001 ~ 4164715 (-)
CI01000299_04171373_04175441 NA coding upstream 956846 4171149 ~ 4175441 (-)
G406858 NA non-coding downstream 1819 3158396 ~ 3204366 (-)
G406862 NA non-coding downstream 9186 3196293 ~ 3196999 (-)
G406872 NA non-coding downstream 30264 3174373 ~ 3175921 (-)
G406889 NA non-coding downstream 36930 3166531 ~ 3169255 (-)
G406884 NA non-coding downstream 51067 3154600 ~ 3155118 (-)
G406912 NA non-coding upstream 25006 3239309 ~ 3239848 (-)
G406932 NA non-coding upstream 75159 3289462 ~ 3295137 (-)
G406942 NA non-coding upstream 89449 3303752 ~ 3305190 (-)
G406941 NA non-coding upstream 98080 3312383 ~ 3316446 (-)
G406927 NA non-coding upstream 119740 3334043 ~ 3335207 (-)
G405053 NA other downstream 1188135 2017687 ~ 2018050 (-)
G404976 NA other downstream 1325197 1855639 ~ 1880988 (-)
G404784 NA other downstream 1546185 1659655 ~ 1660000 (-)
G404372 NA other downstream 2130294 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2533329 670680 ~ 673625 (-)
G407413 NA other upstream 1261691 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1711665 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2227034 5427661 ~ 5443433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location