CI01000299_04131136_04133439 (PCNP)


Basic Information

Item Value
gene id CI01000299_04131136_04133439
gene name PCNP
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4131060 ~ 4133941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04131136_04133439.mRNA
AAATAAAAAAACAGGAGTCAGAGAGACAAATATATTTCATAGAGCATCATGATTTTGGATATGATACCATGGTAACATGAGTCGTTTGCTCACTCTGTACGCTAGATGGCGTTGTTTACAAGTGGAAGAGCAGGAGCGACAACAGAGGGGTTCTTTTCTTTTTGCGACTGCAGCGGTATTTTGTCCTATCCGGTTGCCCACGGCATCAGGGGACAGTCTGCGAAAGCGGCCTGCTCATGAGATCGACCCAGAAGATGAGGCTAAAAGCAAGTCAGCTCCCCCTAAAATGTTTAAATCGGGGTTTAGCATGACTGCGAAGAAGCCTGCGTCCATCTCCATCAAGCTTGGAGCAAGTAAACCTAAGGAACCCACACCTGCCTTACCTGCCAAGAAAGCTGGACTTGCATCTGTTTTTAACGAGGATGATGATAGTGAGCCTGAAGAAATGCCACCGGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGACCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAGAAACTTTGGGAGAGGAAGCTCAAATCCCAGACAGATCAGTAGCATCTGGCTTCTTTCAATAGCTTGCTTTTGGGCACTGAAATATTTGTCTTATTGTCTCTTTGTTTGATAAACATTGTACAAATGTATATATGTAATGAATGTTTATGCTATCAAGCATCTTTTTATTGTAGCTATTTTGTTTTTTAGCCACGCTGTGGTTAAAAATGCCTTCCTGTGTAAGGTGCAAACAGAGAAAATGAGCATAATCTTTATTGCTGTACAATATGTGCTGCACCGACCCGTTATCATTTGCTTATAGTTTAGTTGTTCTCCAGAGAAGGAATGTAGTGGTCCAGTCATTTAGGATTGTTTTAAGTTTCATTCATGGCAATGAAAGAAGACTCTGTAGTTTATGATTCACTA
>TU466041
GTACGTGCTTAAAGCAGATTCATACGATGGCGAATGTGAAGTGCAGCAGCGAAGGCCCTTCTAAAGAAGGAGGTGAAACTGTCAAAACTGTTTTTATTTTGGAATTAGTTTACACTTGAAAGTCTTCGAGAGTAATTGTAGTACCTATATTTTTGAATGTAGGTATAAAATAAAGTCATAGCCATAGATTTGGACTTTCTTGTTAACTAAATTTAGCAAGCTAGCTAAGTTAGCTGGTAACGATCTGCTTTCTTTTCTATGCTGTGTTTTCAGATGCGTAATATTTAACACTAATATTAGATATACCCTAACAACAGTAAATGCATAACAATGTTGAATATTATATGTCCAGCGAGCCTTTGATCCATACACTAACACAAGCTCAAAAAAGTACCATGGTGTTTTGGATTTGTACCATAAAATAGTCATTCGTGGAAGTACATGTGAGTACCACGTGAATACTATGGTACATGAATTTAAGTATATGTACTTACCATCTTACTGTCATTGTGGCATTCTTGGAAATGTCTTGACATACATAATATGGTGATTATATGGTTTAGGTATTTTACCATAGTGTAACATTTGAATACCGTAGGCGATATGGTAATAATTCCTGTGGTAAATATCAAAGTACTATGGTATTATTGTCTGATGGTTCTGTCATATATCTGACATACTTCTCAACACTCACAACTTCCAATGCTTTGCTGATAGCAGCCAGTAATTAAATCCAATTAGTGTTAATCAAATGAATCAGACTAATCAATTAGGTTTTAGGCTCAACAGCGTCTCTCTGAGCAGGTCCTCCTGGCATCCCTCATCTTTCAGGTAACTGTAGCTCACCTTTGGTCTCCAAGGCAACAGTCGCTCACCTTGGTAAGTTGTCTCGCCTCCAGCAGGACCAGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCACGGCATCAGGGGACAGTCTGCGAAAGCGGCCTGCTCATGAGATCGACCCAGAAGATGAGGCTAAAAGCAAGTCAGCTCCCCCTAAAATGTTTAAATCGGGGTTTAGCATGACTGCGAAGAAGCCTGCGTCCATCTCCATCAAGCTTGGAGCAAGTAAACCTAAGGAACCCACACCTGCCTTACCTGCCAAGAAAGCTGGACTTGCATCTGTTTTTAACGAGGATGATGATAGTGAGCCTGAAGAAATGCCACCGGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGACCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAGAAACTTTGGGAGAGGAAGCTCAAATCCCAGACAGATCAGTAGCATCTGGCTTCTTTCAATAGCTTGCTTTTGGGCACTGAAATATTTGTCTTATTGTCTCTTTGTTTGATAAACATTGTACAAATGTATATATGTAATGAATGTTTATGCTATCAAGCATCTTTTTATTGTAGCTATTTTGTTTTTTAGCCACGCTGTGGTTAAAAATGCCTTCCTGTGTAAGGTGCAAACAGAGAAAATGAGCATAATCTTTATTGCTGTACAATATGTGCTGCACCGACCCGTTATCATTTGCTTATAGTTTAGTTGTTCTCCAGAGAAGGAATGTAGTGGTCCAGTCATTTAGGATTGTTTTAAGTTTCATTCATGGCAATGAAAGAAGACTCTGTAGTTTATGATTCACTAATAAATGAAAAATGTAGTGTGAGACTGTGGATCTGAACAGATTTTTTTTTCTCTATTTTGTAATCAGTGTGCTAATCAGCTTTTGAAAGCAGAATTAAAGGATTAGTTCACTTCTGAATTAAAATGTCCTGATAATTTA

Function

symbol description
pcnp Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04131136_04133439.mRNA False 958 mRNA 0.42 5 4131060 4133802
TU466041 True 1850 TUCP 0.39 4 4131258 4133941

Neighbor

gene id symbol gene type direction distance location
CI01000299_04122601_04126314 MLE3, MYLZ3, MYL1 coding upstream 4679 4122601 ~ 4126381 (+)
CI01000299_04105476_04115171 LANCL1 coding upstream 15833 4105476 ~ 4115227 (+)
CI01000299_03981006_04059237 ERBB4 coding upstream 71823 3981006 ~ 4059237 (+)
CI01000299_03594891_03678552 ERBB4 coding upstream 451448 3594891 ~ 3679612 (+)
CI01000299_03495286_03498691 NA coding upstream 632331 3494539 ~ 3498729 (+)
CI01000299_04259743_04263032 ENG1B, EN1 coding downstream 125119 4258921 ~ 4263493 (+)
CI01000299_04269257_04269673 NA coding downstream 134665 4268467 ~ 4269765 (+)
CI01000299_04472181_04474247 NA coding downstream 337154 4470956 ~ 4474271 (+)
CI01000299_04480751_04492829 NA coding downstream 346751 4480553 ~ 4493116 (+)
CI01000299_04496757_04504238 NA coding downstream 362584 4496386 ~ 4504483 (+)
G405573 NA non-coding upstream 1460 4128994 ~ 4129600 (+)
G405568 NA non-coding upstream 14876 4078975 ~ 4116184 (+)
G405797 NA non-coding upstream 54023 4076805 ~ 4077037 (+)
G405569 NA non-coding upstream 65495 4065131 ~ 4065565 (+)
G405578 NA non-coding upstream 218102 3893020 ~ 3912958 (+)
G405577 NA non-coding downstream 46048 4179850 ~ 4196335 (+)
G405815 NA non-coding downstream 85639 4219441 ~ 4219649 (+)
G405817 NA non-coding downstream 89359 4223161 ~ 4223448 (+)
G405818 NA non-coding downstream 91013 4224815 ~ 4225273 (+)
G405825 NA non-coding downstream 107058 4240860 ~ 4241092 (+)
G405609 NA other upstream 975886 3154597 ~ 3155174 (+)
G403972 NA other upstream 3524710 604870 ~ 606350 (+)
G403609 NA other upstream 3720272 364139 ~ 410788 (+)
G403578 NA other upstream 4058789 35462 ~ 72271 (+)
G405842 NA other downstream 161731 4295533 ~ 4320141 (+)
CI01000299_04703290_04704365 NA other downstream 568580 4703071 ~ 4704780 (+)
G406096 NA other downstream 790660 4924462 ~ 4927844 (+)
G406244 NA other downstream 1237379 5371181 ~ 5373579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G30270 NA non-coding CM030123.1 CM030123.1 52288890 ~ 52289123 (-)
mexican tetra (Astyanax mexicanus) G106642 NA non-coding NC_035908.1 CM008311.1 27915547 ~ 27918196 (+)
mexican tetra (Astyanax mexicanus) G64710 NA non-coding NC_035903.1 CM008306.1 17769247 ~ 17815728 (+)