CI01000299_04736806_04740333 (CLIC6)


Basic Information

Item Value
gene id CI01000299_04736806_04740333
gene name CLIC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4736806 ~ 4740975 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04736806_04740333.mRNA
CCCAAACACCCACAGAACACGAAGACAGACTCTTACCAAATGAAATCAGCCATTCTGGATTCACAAAGGCATTTTCATGCATTCAGAGAATTCAATTTTATTAGACATGTAAAAGCAGTGTATCTGCAGCATTTCACAATGGCTTGGTTTGATGTAGCAGCTAAAAAATTGGGATTTCCTAGCATTGAGCTGTTTGTGAAGGCCGGCAGTGATGGAGAGAGTATCGGGAACTGTCCCTTCTCTCAGAGACTCTTCATGATCCTCTGGCTGAAAGGAGTCATCTTCAACGTCACCACTGTGGACCTCAAGAGGAAGCCGGCGGATTTACAGGATCTCGCTCCAGGAACAAACCCGCCATTCATGACCTTCAATGGAGAGGTTCTGGTGGACGTCAACAAGATTGAGGAGTTTCTCGAGGAACGACTGGTCCCACCACGATATCCAAAGTTGGCAGCAAAGCATCCAGAATCCAACACAGCAGGAATAGATGTATTTGCCAAGTTTTCTGCCTACATCAAGAACCCTCGTAAAGAAGCTAATGAGGGTCTGGAGAAAGCTCTTCTGAAGTCCCTGAAGAGGTTGGATGAGTATTTGCAGACGCCGCTGCCCGAGGAAATTGATGCCAACAGCCTAGATGATCCTGGTGCGTCTACACGAGGCTTTCTGGATGGACCAGACCTCACGCTGGCCGACTGTAACCTGCTTCCCAAACTACACATCATGAAGATTGTTGCTAGGAAATACAGAGGTTTTGAGATTCCTGCTGAGATGACCGGAATTTTACGATATTTGAATAACGCCTACCAGAGAGAAGAATTCATGAACACCTGCCCTGCTGACCGGGAGATTGAGTTCGCTTACCTGGACGTCGCCAAAAAGATCAAATAGTTCAGGATGACGAGACAAGTAGTGGTAACTCGTAGTCAACCTCACATGCTTGTGTGTGTAACTGTATGCGTGTGTGTGTATGTGTGTGTATGTGCGTGTGTGTGTGTGTGTGCACTCACTGGTGGAGCTGCATTAATACTATGGTGTATTGATCCTAAATCGATAGATTGGCATCCATTTTCCTTCAATCAATGGCAGGACCAGGAAAATAGTATAAGACCAGACACAGAGATGAAATATTCTGTCTGTTAGTACTCTTAACAAATCCATATGTATCTTATCTGTCTTCATGGATGATATAGATAGACTAGCTATGGTATATTCATAATGTTCACCATGGCCTTGACCGAAATTGATCTCATAATCACTTTTAAGCTATGGATCTCTATATTTCTGGATCTCTATATTTTGCATATTTGTTTTGTTTTTATCTGAATTTTTACTTATGATTCCTCTGGTCAGGCCAGAATATATACACATACATTTTCTATTTACATTTTCTATTTAATAAATAATAATAATAATAATAATAATATGGAGAATCAGGTTCATTATTTACAATATCACCATATAGTTTAATGAAACTCTCCTTTTATATCATCACACGAATGTTTTTTTCCACAGGTTGATGGATTTTTTAAA

Function

symbol description
clic6 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport; glutathione metabolic process; and regulation of ion transmembrane transport. Located in cytoplasm and nucleus.

GO: NA

KEGG:

id description
K05026 CLIC6; chloride intracellular channel protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04736806_04740333.mRNA True 1530 mRNA 0.41 6 4736806 4740975

Neighbor

gene id symbol gene type direction distance location
CI01000299_04703290_04704365 NA coding upstream 32209 4703071 ~ 4704780 (+)
CI01000299_04554181_04557794 NA coding upstream 178966 4554111 ~ 4557840 (+)
CI01000299_04532498_04539703 NA coding upstream 196887 4532098 ~ 4539919 (+)
CI01000299_04513358_04524537 NA coding upstream 210129 4513358 ~ 4526677 (+)
CI01000299_04496757_04504238 NA coding upstream 232323 4496386 ~ 4504483 (+)
CI01000299_04819297_04829755 NA coding downstream 77710 4818685 ~ 4829987 (+)
CI01000299_04864582_04885052 RUNX1 coding downstream 123217 4864192 ~ 4885385 (+)
CI01000299_04892566_04900169 NA coding downstream 149416 4890391 ~ 4900536 (+)
CI01000299_04906697_04907091 NA coding downstream 165722 4906697 ~ 4910073 (+)
CI01000299_05128395_05192154 NA coding downstream 387373 5128348 ~ 5192994 (+)
G405967 NA non-coding upstream 64911 4671525 ~ 4671895 (+)
G405966 NA non-coding upstream 65324 4671215 ~ 4671482 (+)
G405865 NA non-coding upstream 71762 4649936 ~ 4665044 (+)
G405881 NA non-coding upstream 73411 4658341 ~ 4663395 (+)
G405994 NA non-coding downstream 77513 4818488 ~ 4933935 (+)
G405999 NA non-coding downstream 193340 4934315 ~ 4936448 (+)
G406101 NA non-coding downstream 215175 4956150 ~ 4956356 (+)
G406134 NA non-coding downstream 515764 5256739 ~ 5257212 (+)
CI01000299_04480751_04492829 NA other upstream 230889 4480553 ~ 4493116 (+)
G405842 NA other upstream 416665 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 602865 4131060 ~ 4133941 (+)
G405609 NA other upstream 1581632 3154597 ~ 3155174 (+)
G406096 NA other downstream 183487 4924462 ~ 4927844 (+)
G406244 NA other downstream 630206 5371181 ~ 5373579 (+)
G406161 NA other downstream 1496863 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000937 clic6 coding NC_007112.7 CM002885.2 1618994 ~ 1631399 (-)