CI01000299_04892566_04900169


Basic Information

Item Value
gene id CI01000299_04892566_04900169
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4890391 ~ 4900536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04892566_04900169.mRNA
TTATAAAAAGAGCTCAGGGTGTGAGAGCAGCATGTCAGCACCACACACAAACACACACCGCCGGCGTGTCTAGTGTGTGAGAGAAATACTTGGCTGAATGTGGTGAAAAATGAGGCTATTTCTAGTATTTCTAGTAATTGGAGCCTGTCTGATGCTACTTGATTCTTTTGGAAGGAAAGTCCACCAAACAAAAAGGAAATATGTTTACAGCCATCTAGAGTGCAAAACAACTTTGCATAAATATGTGCCATAAATTAACTATTCCTTAGTATTCTAGTAAATTAAGTAAGCACTTAATATTCCAGTCAGGTATCATAAATATGCAAAAACAACTCTGCATAATTGTAATGGTATATCAATTAAAATAATTATTAAAATATTCATAGTGCATTTTTTTTATTGTAGCTACTAATTACTTGTTTTATTTCTACTTTTTGATGATAATTAAATATTTAAATAATTAAAATAAAATATACATTTCTGCTTTTTTGATAAAAATAATTGAATATTTAATTAAATAAATATTGGCTCAGTTATCAGACACTTAAAAAATAATATCAGATATTAAAATAATTAATAAAATATTCATAGTGCATTTTTTTGTAGCTACTCTAATGATTACTTGTTTTATTTCTGCTTTTTGACAGTAATTAAATATTTAAATAACTAAAATAAAATATGAATTTATGCTTTTTTGATAAAAATAATTGAATAAATATTGGTTCTGTTATCAGACACTTAATAAAAAAATAATATCAGAAAGTAACTTTTGAGAAACAGTGAGTTCACATAAAAAGCAGAAAGAAATGAAGAATGGCCAAGTTTTTGTAATTAAATGAAAAGAATATATATATATATATATATATATATATATATATAGTTTGAACCTCTTACAAAACGATCAGTCTTTATTTGAAACAGTTGAAATAAACTTTAAATACAAATATAAATCATAAAATGCATATTTGTATTCTGTAGGGTGAAAACAATTATTGTATTTTTGTTTTAAAATACATATTTAATTGAGACGTGTAACAAAATCATCATGTTAAAGTATGCAATTGCAACAATATAACATATTTAACACAAACACAGTAGTTATAATGCGAATATCTACTTTATTTGACATGTACACGTTTAATTAAATTGTTTTAAAACACACATTTTATTATATTTTAAGACAAAGTTGAAGAATGATCTAAAATGTTCTCCTAAAATTCCCTTTAAGAAATAAAATGTGTCACTAGTCATCATCAAGAGACAATAAAATGAATATGAAGCAGCTTGATCATTTAATGAGAAATATTTGAGATCATATTGAGACAAATAGAGAACCTTTTATCTTTTTGCAAAGCTGATTTTGTGTTTTCATGTAAATATATTCTTTAAGAATACAAGTCCAGCCTCTATATTATTATAAATATGTCCAAATTTTCCTTGGGGTCAGAGGTCACCTTCAGGCCATTCATCACGCGAGTCATCGTTCCTGACCAGCTCCAGGATCGATATGAAGTGCCATCAACCCTGACAACTCATCCATACGACAATATTCAGCTCCTGTCATTTCACATCGTGATTAATCACAAATGCAAATGATGAATAACGGGCAATTAATCGTGACACGAAGCGACATTCAACCATTAATCTACATGCTGACATACTGAAAGACAGAAGAAGTTTAGCATCTTATGGTTATAGAAGTGAATAAATTAGACTGGAAATATCAACTAAATTATTTTAGATTTTCAGATAGGCCTATTTTGGATGAAATACGAGCAAAACTAATTATAGACTATGTAAATATTTTTATATATGTATATTAACCATTAATATAAGAAAACAAACATGAAACAGCTGTCACTTTACATTCAATTTACTGCCATAATAAATGTATCTGGACAATCTACCTGAATAGATTCATATAGACTATTTATTTGTTAGCTCATAAATATTTTACGTTCTTTATTATTTTTTCTTTTAGTCGGAAATAAATATGAAACAGAGACTTTACATTTGCCGGGTGTTTCGTTAGTACGCCAACACGCTCATTGCGTCATCACGCAACGTGCTGACGCAATTACGTTACGCGCGAAATTTTGAGCGAACAAAACAATCGTCAGAAGAGCCGCCGCAGTTCCCGCTTCACACACACAATAATCGACAGAAACGGTCGAGATGGCGGAGTTGGGCTGCTACTCTCCCAGCTTTAAAAAACCGTCTGATGTTCTTCGGATGAGACGGAAGCGCGCGCGGAGCGAAGGGCCAAACAAGAGGACGTCGAGTCCGGTTGTGTCGGTGGACGGAGTCCGTCCGTTCTCACCGGGGCCGCTGTTGAACGCACCGGGCCGGGCGAGCGGCGGCGTGAAGCGCAGAAATCCTTTCGCGAACATCGAGAACACGTACAGCAGTCCTAAGAAACGAGCGTTATCACACACCGACGGCTGCAACGGCGCTCTGGACGGTAAAAAGGCGGAAACTGCAGTTTTGGACGGGAAATTCAGAGAAGAACGTCCAAACGTTGGCGTTTCACTGAGAGAAGAGCTGTTCAATACAGACCAGCGAAAACTACACGAGATAAAGGCGCCGGTCTCCCTCTCTGAAGATGACTGTCTGTTTGAGGACGATCTGTTTGAGCCGGAGAGATCCGCTCCAGTGCTGAAGAGTCCAGAGGCGGTTTGTTCCGCGGCTCCGGCTGAAGTGTGTCTGGAGTTCCCGGCGGATTGGTCCCTGAAAACCCGCGTGTTGTTCACGTCTCCTCAGTCGTTCTCCTGGGCTGAACATCTGAGGGCGCAGGAGGAGGCGCAGGGCTTGAGCTCTCACTGCAGGGCCGAGTTCTCCAGCTTACCTGCTAACATACAGGATCCCCGGGGCTGTGCGGAGCTGCGCTGTGGTTTTCAGCAGTGTCTTCAGTACTGGCAGCACCCGTCGTTGCCCTGGCTCTCCCTCTTCCCACGGATCGGTGCGGAGCGTAAGTTCTCTGGAAAGTGCGTGCCGTGGGCGCAGGACGAAGCGCTGCAGCAGAGCCTGATGAGCGACTGGTCTGTGAGTCTGACGTCTCTGTACAGTCTGCTGAAGGCCCGTCTGTGTCCGTATTTCTACCTGTGCTCGTATCAGTTCACTGTGCTGTTCAGGGCGGCCGGTCTGAGCGGTGCTAAAGGCATCACTGCACTGCTGTCGCCCACCACTAGAGGGCTGCGAGAGGCCATGAAGGCTGAGGGGATAGAGTTCTCACTCCCTCTGCTGGAGGAGCGGAGGAAAAGCAAAGAGCTCGGCTCATCTCAGGCCGGTGAGAGCGTTCAGCAGGCTGACAGTGAGGAAGTTCGTAAGGAGCACAGAGAGGTGCGTTTGGACCACAGACCAGAGTCCGTGGTGTTGGTGGAGGGTTCGAACACCTTCACGCTGCTCAACTTCCTCATTAACTGTAAGAGTTTGGTGGCAGGAGCCGGTTCTCAGGCAGGTCTTCCTCCAACACTCCTGGCCCCTACAGCCTTCAGAGGGGCCACACTGCACACGCTCAAGGCCCGCACTGTGAATGTGAAGACTCAGGTGAGGACGGGCTATCAGGACGTGTGCAGTCTGGAGGTGACGGGTCCCATCATGCCCCACACGCTCCACGCGCTGACGCAGCTCCTGAGACCCGCTCAGAGAGGAGAGTTCAGCGTGGGTCTCTACACCCATGAGCCCACGGCCGTCCTCAACGTACCCATCAGCCAGAGCTCTGAACCGCCACAACTGGAGTGTGTTGTACAGGATCTGGGAAGGTGTGGCCTACAGCAGAGCTCCGTTCAGCAGCTGGCAGCGCCGAGCATGCTGGGAAAGTGTGCGCTCAGACAGCTGCACATGAGAGACTACTCGTACAGCTGGAAGTCCTGAGAGTCGTGAGCTGGTGGATGTCTCCTCTCCTCTGACAGGCCAGGACTATTAATATCTCTTGGCGTATCAGGTGTCCTGTGACGTTACAGTACGAGCGCTCAGAGATTGTGCTTGTATATAGTGTAGCTTTTAGTGTACGATGTATGTAAATGTTAGTTTGAAACTTGTCATTTTAAGTCTCAATTTTTATGGAGTGTTTTAGATGATGTGATTTTAAAGCTCAAGTTTTAATCATCGTCTCTATATGAGAAATTACTGATTCCTTCCTCAAGAAGTACACGTGTAATTCTGTGTTAAAAACTCTCATGGTAATATTTCTGACTGTTGAAATCCAGTGTATTATTCACACTTCTATGAATGTATAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04892566_04900169.mRNA True 4240 mRNA 0.41 9 4890391 4900536

Neighbor

gene id symbol gene type direction distance location
CI01000299_04864582_04885052 RUNX1 coding upstream 5006 4864192 ~ 4885385 (+)
CI01000299_04819297_04829755 NA coding upstream 60404 4818685 ~ 4829987 (+)
CI01000299_04736806_04740333 CLIC6 coding upstream 149416 4736806 ~ 4740975 (+)
CI01000299_04703290_04704365 NA coding upstream 185794 4703071 ~ 4704780 (+)
CI01000299_04554181_04557794 NA coding upstream 332551 4554111 ~ 4557840 (+)
CI01000299_04906697_04907091 NA coding downstream 6161 4906697 ~ 4910073 (+)
CI01000299_05128395_05192154 NA coding downstream 227812 5128348 ~ 5192994 (+)
CI01000299_05254419_05314859 NA coding downstream 353883 5254419 ~ 5316243 (+)
CI01000299_05331367_05364944 NA coding downstream 430665 5331201 ~ 5364977 (+)
CI01000299_05392812_05418070 GART coding downstream 492156 5392692 ~ 5418352 (+)
G406023 NA non-coding upstream 124168 4690895 ~ 4766223 (+)
G405967 NA non-coding upstream 218496 4671525 ~ 4671895 (+)
G405966 NA non-coding upstream 218909 4671215 ~ 4671482 (+)
G405865 NA non-coding upstream 225347 4649936 ~ 4665044 (+)
G405999 NA non-coding downstream 33779 4934315 ~ 4936448 (+)
G406101 NA non-coding downstream 55614 4956150 ~ 4956356 (+)
G406134 NA non-coding downstream 356203 5256739 ~ 5257212 (+)
G406203 NA non-coding downstream 411632 5312168 ~ 5745426 (+)
CI01000299_04480751_04492829 NA other upstream 384474 4480553 ~ 4493116 (+)
G405842 NA other upstream 570250 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 756450 4131060 ~ 4133941 (+)
G405609 NA other upstream 1735217 3154597 ~ 3155174 (+)
G406096 NA other downstream 23926 4924462 ~ 4927844 (+)
G406244 NA other downstream 470645 5371181 ~ 5373579 (+)
G406161 NA other downstream 1337302 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000933 CZQB01066256.1 non-coding NC_007112.7 CM002885.2 1350111 ~ 1352997 (-)
rainbow trout (Oncorhynchus mykiss) G125273 NA non-coding NC_048566.1 CM023220.2 24707474 ~ 24707709 (-)
eurasian perch (Perca fluviatilis) G107709 NA non-coding NC_053121.1 CM020918.1 24427274 ~ 24427808 (+)
mexican tetra (Astyanax mexicanus) G107083 donson,LOC107751081,LOC107698893,LOC107555241,LOC107571885 misc NC_035908.1 CM008311.1 29549436 ~ 29557993 (-)