CI01000299_05254419_05314859


Basic Information

Item Value
gene id CI01000299_05254419_05314859
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5254419 ~ 5316243 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05254419_05314859.mRNA
AGGGCCAGAAATATCGCCTCCCACGCGGCTGCTTTATGACCTTCAGCTGAGCAGCTTTACAGACGAGAGCACCTGGAGTTTGCATATGGCGCTCTCTAATTCTCCATGTGGCCTCTCGTTAAAGTCGCTGGCTGCCAGAGCTAAAGAGGTGTCGCAGATTACAGCGAGTGTAAAACCAAGCGAGACGGCTGCGTCTGAGAGTTTGAGGACATGTTGCATGTATTGGAAATATTTTGAACAAGCCATTGGTGAGCCGGTCAGCATAAACTGGTTCAGTCCTCAAGGCGAGCGCATCATCTCAAACCAGAGAGTGATCGTGCACACAGAGGGCGTGCGGTCCAGGCTAACCATCTACAACGCCATCATCGAGGATGCTGGGATATACCGATGCCAGGCTGTGGACGCCAAAGGACAGAGCCAGGAGGCCACGGTGGTGCTGGAGATTTACCATGACCTTCAGTGCAGTCTGTTTGGACCGTATTCTCCACAGCGTCCTCGCGCTGAAATGAAGCCAGATCTTCAGAATTTTCAGTGGGTCAATGAGGAGAAGTTGACGTTCCGCGAGGTGAAGACGCCGCAGGAGTTTCGTCAGGCCGAGGACGCTGAGGTCATCTGTGATGTCATCAGTTCACCTGTGCCAGCCGTGTCCTGGTTCTACAAGAACAGAGAAATCACGTCCGAACCGAACAGCAGATTTCAAGTGCTTCCCAGCAACAACCTGCAGATCCTGAGAGTGAGCAAAGCTGACGAGGGCGTGTATCGCTGTGAGGCGCGTGTAGAGGCCCGAGGAGAGATCGATTTCAGGGACATTGTGGTGCTGGTGAACGTTCCTCCGGTTCTGTCAGTGCCGCAGCAGTCCTTCAACGCCACCGCCGACTACCAGGAGTCAGTGACGTTCACCTGCATCACCTCCGGCTCCCCCGACCCTCAGGTGACCTGGTACTGGAAGGGTCACGTGATCGAGCGATCGGAGCAGTATGTGTTGAACACTATGGACGGAGGCAAAAGCACGCTGACCATTAAAAACATCCGTCAAGGTGACGGAGGGCCGTACACCTGCCGCTCCAGCAACAAGGCCGGGAGCACCGAGAGTCAGCTGTTCCTCAAAGTGTTCGAAACTGATTATTTTGATTGGACCTCCTGTCTTTGCATGGAAATGTATGGAGATTTATTCTCCGCCATCAAGATCCAAGAGCCGGAGACGGTTGTTCTTCAGAAGGCACATTTATATGACGCTCTTATTGGCGTGTCGTGTGTCGTCTGTACGTGTCTCCGGCTCTCAGGGGAGCTTCAGTTCACAGTCAACAGCTGCAGTTTACAGCCACTGAAAGAGTTTCACGGTTATTCATTTTGCCGAGCAATACAGAGATTGAGTGCTGCAGAAAATACATCATTCATCACAACATATGGGAAAGAGCACTCTAAAAAACGCTGGCTTGAAATCCAGCCTCACATCACTCAGCTGAGGAACGTCACAGCGGTGGAGGGAAGCGCTGCGATGATCTCCTGTACGGCTGAGGGAGAACCGCTGCCCGAGATCTCATGGAGGAGAGCCAGTGATGGACAGACGTTCACAGATGGAGATAAGAGTCAGGATGGCCGTGTGGAAGTGCGTGGACGACATGGGAAATCCATGTTGACCATCAGCGGCGTTCGACTCTCAGATTGGGGTCGATTCGACTGTGAAGCTCTCAGCAGGATCGGAGGCCATCAGAAGAGCATGTTCTTGGATATTGAGTATGCACCGAAGTTCCAGACTAATCAGAGCATCTTCTACTCATGGGAGGGAAACCCAGTGAACATCAGCTGCGACGTGAGGTCCAACCCTCCAGCAACGATGCTGTGGAGACGAGACCGGTTTACCATCTCTAGTCAAGGGACCAGCAACATTCGCATTCACACTGCAGAGGGACGATCGCTTCTGGAGGTCACTCCGGTGTCCGACAGGGATTTTGGACGCTACAACTGCACAGCCAGAAACAACATCGGCGCTCGATACCAGGAGTTTATATTAGCACAGGCAGATGTCCCGTCGAACCCGTACTCCGTACGGCTCACCGCCGTCTCCCAGCGTCTCGCCACCGTCACCTTCATGAAGCCCGACTCGCACGGAGGCGTCCCGATCAGCTATTACATCATCAACTACAAAGACACGAGCACGCAGGATTGGAGGACAGTGAGATCACATGGAGTTCAGAGCGAGCCGAGTCCTCCGACGGTTCACGGACAGAGAGGCGTCGGGAAGGCCTACAGACTGGGACTGATCAAACAGGACGACGGTGGGATGCCTATCGTCGAGTACATCGTGAAGTATAAAACGGATAAAGAGGAGCAGTGGATGACGAAGCTGGTTCCCGGCATGAATGATTTCGCTCTGCTGCAGCCGCTGCAGTGGAACACGCGCTACAACGTGGAGATCACGGCACGCAACGTCAAGGGCCTGTCGGAGCCCACCTTCTTCCAGTTCCTCATGCCGCAGAAACCCGACATCACAGCAGATTCTCTGTTCAGCGGTCTGGGTCTCGGCGCTGTGGTGGGTCTCGGGGTGGCGGCTCTTCTTCTGCTGCTGGTGCTGGTGGACGTGTGCTGCTTCTTCCTCCGTCAGTGCGGTCTCCTCATGTGCATCACCCGCAAACTCTGCAGCAAGAAAACCACAACCAGCGGCAAGAGCAAAGAGCTGGAGGAGGGCAAAGCCGCCTACCTGGTTGATGGCTCGAAGGAGCCCATCGTGGGGATGAGAAGTGAAGAAGAGAGAATTGCTAACAAGGAGGACTGCAGTCCAGTGCACGAACCCAATGAGACGACTCCTCTGACAGAGCCAGAGAAACTCCCGCTGAAGGAGGAGAACGGCAAGGAGGTGCTCAAGCCGGACTTGATCGAGATCAAGGTCCACACGGACAACAGCATCCACACAAAACAGGACGACAGCAAAGCGTAATGGAGACCGGAGGCATTCCCGGCCCCAACAAACTGAGACCAAAACAGAAATGAAAAAAAATATCACAAAAGAGAAAAGAAAAAAGAAAAGAAATCTTCACTAATGAAGGGCGTGTAAATATGTTCAAATATAAACAGAGTTTTTTTGTGATAAATCTACTGTTCTTTCTATTCACGACGGCTCCAGCACTACTTTTCGGTTGATGTGTCCGTCTTTGTGTTTTGGAGGATCTCAGAAATGAGCCCATTGAATTCCCAGGCCTTCTTCTACTGTCCAGGCATGTCCAGTCCGATTTCTGACCAGCGGGACGTCGTATTGTGTCATAAACACTGCAAAAAATCATGTTCTTCCTCAGTATTTTTTGTGTTGTTTTTCAGCACAAATATCTAATTATTCTTACATCAAGATACATTTACTGGAGAAGCAAAATGACTAAAAATATTAAGATATTAAAATATTAATTGATCAAAATTGAGTTTATGCTTAAAACAGGAGAAATATATATATATATATATATATATATATATATATATATATATACATTCAACAAAAATGTTAAGCCTTTATTAAGATTTAAGCAATTTAATTAATAGTAAAAATTGTAATTGAATAATTGATTAAGGATTGTTCACTTATTCAATTAAAATTCATAAGGATTATTCAGTTCAGTCTGATAGAATTTTACTATTAATTAAATTGCGGAAATCTTAAAAAAAGGCTTTACGTTTTTTTTAAATGTGTGTGTGTGTGTATATATATATATATATATATAATTTTTTTCTTTATTTTTTTGACCCCACTGTCAGATTTTTTTTCTTGTTTTAAGCATAAATTCATTATTCGTTATGTTCCATTCAGTGGACTCTTATTTTGATATTCTGTTCTGTTTCCTTTAGTTCCCTTTTCCCTGCTCTGTTTAGTTTCACATTTAGAACATTTGAATCACTTGAACCAATTGCTTTGTAAAATGATTCACTGTTTCAAAAAACACCTTTTACAAACTATTTGCAAATGTTTTATTCAAGGTGTCATCTATTAAGTGCGATTAACAAATCATATGAAGGTTCTCTAATATGTGTGGTTTATTTTATGAATAAAATTAAATCATTTTATGGAGAGCTTGGTTAATCAGAGACTTTTAACTACAACTCCTCTTTTTAATATGCAAATGTGTCATTAAATGTCTACAAATGTATAAAATTGATCCAAGAACAGGTAAAAATCATATAGCCGACAGACGGTTCATGGGTTTGCAGAGATCGTAGCGGCGAAATATTGAAATTTCAAAAAAATTCGAAACGGTTCTGATGCAACGAAGCGAAACTAATGATTTGCAAAAGTTTCGAAGCTTCACAAAGCTTGTTTCAAAAGAATCTATTAGTAA

Function

NR:

description
NCAM2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05254419_05314859.mRNA True 4322 mRNA 0.46 19 5254419 5316243

Neighbor

gene id symbol gene type direction distance location
CI01000299_05128395_05192154 NA coding upstream 61425 5128348 ~ 5192994 (+)
CI01000299_04906697_04907091 NA coding upstream 344346 4906697 ~ 4910073 (+)
CI01000299_04892566_04900169 NA coding upstream 353883 4890391 ~ 4900536 (+)
CI01000299_04864582_04885052 RUNX1 coding upstream 369034 4864192 ~ 4885385 (+)
CI01000299_04819297_04829755 NA coding upstream 424432 4818685 ~ 4829987 (+)
CI01000299_05331367_05364944 NA coding downstream 14958 5331201 ~ 5364977 (+)
CI01000299_05392812_05418070 GART coding downstream 76449 5392692 ~ 5418352 (+)
CI01000299_05619817_05725510 NA coding downstream 303461 5619704 ~ 5727439 (+)
CI01000299_05732790_05737401 N6AMT1 coding downstream 416547 5732790 ~ 5737802 (+)
CI01000299_05778912_05790662 NA coding downstream 462320 5778563 ~ 5790755 (+)
G406101 NA non-coding upstream 298063 4956150 ~ 4956356 (+)
G405999 NA non-coding upstream 317971 4934315 ~ 4936448 (+)
G405994 NA non-coding upstream 320484 4818488 ~ 4933935 (+)
CI01000299_04703290_04704365 NA non-coding upstream 549639 4703071 ~ 4704780 (+)
G405992 NA non-coding downstream 60024 5376267 ~ 5379015 (+)
G405987 NA non-coding downstream 108346 5424589 ~ 5429645 (+)
G406315 NA non-coding downstream 236399 5552642 ~ 5554868 (+)
G406354 NA non-coding downstream 318505 5634748 ~ 5639866 (+)
G406189 NA non-coding downstream 440534 5756777 ~ 5827969 (+)
G406096 NA other upstream 326575 4924462 ~ 4927844 (+)
CI01000299_04480751_04492829 NA other upstream 748502 4480553 ~ 4493116 (+)
G405842 NA other upstream 934278 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 1120478 4131060 ~ 4133941 (+)
G406244 NA other downstream 54938 5371181 ~ 5373579 (+)
G406161 NA other downstream 921595 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038612 NCAM2 coding NW_003336612.1 KN150432.1 6941 ~ 79629 (-)