CI01000299_05919510_05924061 (TXNL4B, TXNL4B.S)


Basic Information

Item Value
gene id CI01000299_05919510_05924061
gene name TXNL4B, TXNL4B.S
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5919128 ~ 5924628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468578
CATCACACACTAGTAAACATCCGCTGGAGTTCAAACGCGTTAATTTTGTTCATAATTGTAAGTTAAATCGTCATGAGCTATTTTCTTCCTAAACTGTCGTGTAAAAAAGACATCGATGACGCGATTAAAACGGTCGCTGAGAAGGTTTTAGTGCTGCGATTCGGCAGAGATGAAGATTCCGTGTGTCTGCAGCTGGACGAGATCCTGTCAAAGACGGCTCATGATCTGAGTAACATGGCGAGTGTTTATCTGGTGGATGTGGACACGGCGCCGGTTTATACCAGATACTTCGACATCAGCTTCATTCCCTCAACAGTGTTCTTCTTCAACGGGCAGCACATGAAGGTCGACTACGGATCTCCAGATCATACCAAGTTTGTGGGAAGCTTCAAAACCAAACAGGACTTCATGGATCTGATTGAAGTGATCTATCACGGCGCCATGAGAGGTAAACTGATCGTCCGAAGCCCGATAGACCCGAGAAACATTCCCAAATATGATCTGCTGTACCACGA
>CI01000299_05919510_05924061.mRNA
AGCAAAAATGTCACATATATCACACAAAACACAAAAATTATTCCAAGATAGTTCGTTTGAAGTTAAATGAAGTGGAAAATCCGGCGATATAACAGAACTGTGACAACTAGCCCCGGTCTCCTCTACATCTATAATAACATTCACACATTTCACAAAAGTAAAATCAATATACCATCAGCTGTATTTCTGTATGTTCACTCAGAAGTCACTGACGAGCCCTCAAAAGGACACACGCTGCTGCTGTCATGTGGATGTCGGTGTGCAACAATAAAAGTTGACCGTGCGGATGTCCTATCGCTTATTAAATTAGATATCTTTAATAACTTGATATTTTAAAAGAAGCTTGAATGCCCTGATGTGAAGTCTATTCATGTTATTTAAAATAGTAAAATAAGTATTATCACTAATAGTAACACAACACATTTATCTTGCGATATGCAAAGAATGTAGGAACTATTGATGGCGTTTCTAGTCGGCTCATATTTAGTGGTGCATCATCACACACTAGTAAACATCCGCTGGAGTTCAAACGCGTTAATTTTGTTCATAATTGTAAGTTAAATCGTCATGAGCTATTTTCTTCCTAAACTGTCGTGTAAAAAAGACATCGATGACGCGATTAAAACGGTCGCTGAGAAGGTTTTAGTGCTGCGATTCGGCAGAGATGAAGATTCCGTGTGTCTGCAGCTGGACGAGATCCTGTCAAAGACGGCTCATGATCTGAGTAACATGGCGAGTGTTTATCTGGTGGATGTGGACACGGCGCCGGTTTATACCAGATACTTCGACATCAGCTTCATTCCCTCAACAGTGTTCTTCTTCAACGGGCAGCACATGAAGGTCGACTACGGATCTCCAGATCACACCAAGTTTGTGGGAAGCTTCAAAACCAAACAGGACTTCATGGATCTGATTGAAGTGATCTATCGCGGCGCCATGAGAGGAAAACTGATCGTCCGAAGCCCGATAGACCCGAGAAACATTCCCAAATATGATCTGCTTCTTTCAAATTTTGTTGGAATCTACAACAATATGAAGAACCTTTCAAAAATCTCCCTGTTTTTATTTATAGTCTGTGTGTTTGGAGCTGATGTGGAGATAGTGTCAGTGATGGAGGGAGATTCTCTCACTCTAAACACTGGTTTAAGAGGGCAGTTTCATATACTACGGTGGAAGTTTGGAAATTCAGACTCACTCATTACTAATGATGAGAGATTCAGAGACAGACTGAAGCTGAATGATCAGACTGGATCTCTGACCATCAACAACACGAGAATCACAGACTCTGGACTTTATCATCTAATGATGGATCATCACAACTATGGGCTCTTATTTAAGACATTCATTGTTACTGTCTATGGAGTGTTTGATGAAGATGGAGTGAAGACAGTGTCAGTGATGGAGGGAGATTCTCTCACTCTAGACACTCGTTTAAGAGAGAAATTTAATCTAATAAAGTGGAGGTTTGGAGATTCAGGCTCAATCATTGCTGAAATTGATAGTAATGAGATCTCATATCCCTTCAATGACACTGAGAGTTTCAGAGACAGACTGAAGCTGAATAATCAGACTGGATCTCTGACCATCAAGAACATGAGAATCACAGACTCTGGACTTTATGAACTAGAGATCGATCAGAACGCTTGGAACCCATTAACGATATTCAAAATTGTCATCTGTGGACCATTCGTTTCAGGTCCAGGTCTGCCTCCAGGTGCTGTAGCAGAAATAGTTGTTGTCGTTCTGCTGCCGGTGTTTGCTGTTGCTGCTGCAGTTTCTTCTGTTTTATACTATCGCTGTAAGATCTCTAAACGAGGAAGGCAAAACCGTGAGTATTACAGCTGATACAGCAAGAGAAAAATAATGAGCTTTATTGTGCTACAGCTGAAGTGGATCATGGTCAAAATCACTTCAGATTTCCTTCTCATTCTGATGTCTGAACAACAACTGAACCTCTTAAATACCAGATACAACATGCTGCTACAGCCATAAATATCTATGGGTACACATGCGTCACGTGACAAAACATACATCATCAAATACCTCTATTTTTACAGTCCACATCACAACACAAAAAAGTTTTCAAATTTATTCACTTTGGAGAGCAAGAGCATCTTCAAAAAGCTCAATTTTCACTGGTCAAAAACAGTCTCAAAGTTTATTTATAAAACACTTTTTAAAAAGAACAAGTGTTTATCAAAGTGCTGTACACACATAAAAGAATAAA

Function

symbol description
txnl4b Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B).

GO:

id name namespace
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468578 True 356 TUCP 0.46 2 5923656 5924133
CI01000299_05919510_05924061.mRNA False 2227 mRNA 0.39 7 5919128 5924628

Neighbor

gene id symbol gene type direction distance location
CI01000299_05896205_05898855 NA coding downstream 20271 5896043 ~ 5898857 (-)
CI01000299_05856747_05860959 NA coding downstream 56142 5856716 ~ 5862986 (-)
CI01000299_05849494_05852270 NA coding downstream 66622 5849402 ~ 5852506 (-)
CI01000299_05831615_05835696 NA coding downstream 83320 5831391 ~ 5835808 (-)
CI01000299_05826769_05831144 NA coding downstream 87816 5825966 ~ 5831312 (-)
CI01000299_05927821_05933216 BLZF1 coding upstream 2686 5927314 ~ 5934832 (-)
CI01000299_05946615_05949088 NA coding upstream 21705 5946333 ~ 5949234 (-)
CI01000299_05974659_05985294 NA coding upstream 49763 5974391 ~ 5985606 (-)
CI01000299_06037407_06054548 TPP2 coding upstream 111589 6036217 ~ 6054548 (-)
CI01000299_06130943_06144384 NA coding upstream 204445 6129073 ~ 6144868 (-)
G407848 NA non-coding downstream 143587 5774249 ~ 5775541 (-)
G407764 NA non-coding downstream 279262 5634840 ~ 5639866 (-)
G407734 NA non-coding downstream 364283 5552628 ~ 5554845 (-)
CI01000299_05457285_05462908 NA non-coding downstream 455956 5456864 ~ 5463491 (-)
G407858 NA non-coding upstream 5011 5929639 ~ 5930546 (-)
G407827 NA non-coding upstream 20747 5945375 ~ 5946025 (-)
G407825 NA non-coding upstream 39052 5963680 ~ 5969556 (-)
G407881 NA non-coding upstream 93914 6018542 ~ 6023664 (-)
G407884 NA non-coding upstream 100397 6025025 ~ 6025802 (-)
G407805 NA other downstream 83139 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 463020 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 990310 4913373 ~ 4927715 (-)
G407413 NA other downstream 1368407 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 607373 6526127 ~ 6532048 (-)

Expression


Co-expression Network