CI01000299_05935373_05943285 (ERCC5)


Basic Information

Item Value
gene id CI01000299_05935373_05943285
gene name ERCC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5934903 ~ 5943413 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05935373_05943285.mRNA
AAATAAAAATCCCATTAAAATTAACAAATAGTAGATTTATCACCACTTTATTATTGTTGTCGTGGTTTTGTATATATTTACTGCTGGAGCGTTTGAGTAAAAATTCGAAATTTTGACATACCAAATCATAATTATGACATAAAAAGTCAAAATTATAACTTGCTAAGTCAAAATGATGAGGTAAAAAAATAAATAAATTATTATGTACTAGGTCATAATAATTATGACATAAAAAGTCGGACAGTTTTTGACTTTTATGTTTAATCTCATAATTTCTCAAAATGATGACCTTTTAATCTCAATTTTTCTCAGACTTTTTCCTCATAATTTTTACTTTTCTCTCATAATTTCAATTTATGTCATAATTTTGACATTTTGACAGGGCTTCTCACGGTTCTGCTTTACACTGTGTGAAAGTTAAAGATGAGGATGATGATGATGATGATGTTTTCCTGCTGTGGTCAGGTGTGATGGGAGTTCATGGACTGTGGAGGCTCTTGGAAAGCACGGGAAAACCCATCAATCCCGAAACACTGGAGGGGAAGATCTTGGCTGTCGACATCAGTATCTGGCTGAATCAGGCGGTCAAAGGTGTTCGGGATCGAGACGGGAACGCGGTTCAGAACGCTCATCTCCTCACGCTCTTCCACCGGCTCTGCAAGCTGCTGTTCTTCCGCATCAGACCCGTGTTTGTGTACGATGGAGACGCGCCGCTGCTCAAGAAACAGACGCTGGCCATCCGGAGACAACGGAGGGAGGAATTGAGCCGCGAGTCCCGACAGACCAATGAAAAACTCCTCCGGACGTTTCTGAAGAGACAGGCCATCAAAGCAGCTCTAGGGGATCAAAGTCAGGAATCAATTCCCAGCCTGTCGTCTGTGAGACGGGATGATCAGGATGACATGTACGTTCTGCCTGCGCTTCCTCCGGAGGAGGACAGAGACAAGAGCAGTTCAGAGGAGGAAAGAGATGGAGACGAATCGACCTTCAGCAGATTTCAGGAAGAGATCTATGACAATCCTAACTCTGTAGACATCAACTCGGAGGAGTTTTCCCTCATGCCTCCGGAGATCAAACACGAAATCTTGAAAGAAATGAAGGAATTCAACAAGAGGCGACGTACACTGTACCACAAACCACCGGAGAGGTCAGGCGAGTTCTCGCAGTATCAGCTGGCCGGTCTCCTGCAGAGGAACAAACTCAACCTGCGTCTGGAGGGAGTGGAGCAGGAGATGAACCAGCGCGGCTCTGGAGGAGCGGAGCAGCCGTACGGCGAGAGCAAAGATCACGACATGGAGGTCCGCCGGCTCGTGTCTGAGGACTCGTCCCACTACATCCTCATTAAAGGGTCTCAGAAGAAGGCCAGCGCTCCAGAGAGTCAGTCGGCTCCAGCGCTGTGGTCCAGCTGTCCGTGGGAACGTAAAGGGAGGCCTAAAGGAAAACCTGAGCCCTTGTGGCGTCCCGTGACAGAGGAGGAGGAGAACAAGCCTTCCTCCTCGTCCTCCTGTGCTGAGGAGGATCTGCCAGCATCAGGAGGAGCACCGGCCTCTCCTCGCACACTGCAGGCCATCCAGAGCGCCATGATGGACGGCAGCTCTGAGGAGGAAGGCATCGATATGAGAGGACACAAGACGACAGGATCAGATGATAAAGATGGAAGCGCGTCGCCTCGAACTCTACAGGCCATCCAGAGCGCCATGATTGACAGCAGCTCTGAGGAGGAAGCCGGCAAAACCAGAGGACACAGGGCAACTGGATCTGATGATGAAGATGGAAGCATGCCACCTCGAACTCTACAGACCATCCAGAGCGCCGTGACACATCCGGCGGCCACAGACACCCACAAACGCAGGGCGTACGTCATCACGAGCAGCTCAGAGGACGAGGATGAAGCGGGAGCGATCGTGAGCGTTTCCTCACAGAAAGAGCCTTCAGAACCAAAGCCTCAGGCCAAAACGCCTCTTATTCCCAGTTCTGCAGTAGAGACACTTGAGCCGCGAGACGTCGCAGTAAATCTGCATCTGAAGCAAAGACACCCGAACACTTCCTCTGATCATCAACCTGTGAATACAGACGTAACAGAAGAAAACAAACCCAAGAGTGAAGATGATGAGGAAAGTAGCTCTGAAGAGAGTTTTATTGAGGTGTCTGATGTGGAGGAACCACCTGAAACACAGCAATCTCACGTCAAAGCAGAAGAAGCAGTCGATAAAAGCGCCTCAGAAGAGACCGAGGAGGAAGAGGAGGAGAGAAGAGAGGAAGAGTCTGGCATACAGAGCTCAGATAAGAGTGATGAAGTCAACGAGGCCGTAGATGAAGCTCCTGCTGCCGCTAGCGAGTGGGATCACATCGACACGGAGCTGTTGCGTTTATTCGGTGTGCCGTTCATCGTGGCGCCTATGGAGGCCGAAGCCCAGTGTGCGGCGCTGGACCGCCTGGACCAAACGCACGGCACCATCACCGACGACAGCGACATCTGGCTCTTCGGCGGCCGGCACGTCTACAAGAACTTCTTCAACCAGAACAAATACGTGGAGCATTACCAGTCAGCTGACATGCAGAACCAACTAGGTCTGGACCGGAGCAAACTGATCAATCTGGCGTATCTGCTGGGCAGTGATTACACCGAGGGGATTCCCGGAGTGGGATTCGTCACAGGGATGGAGATCCTCAATGAGTTTCCCGGCGCTGGATTAGAGCCGCTCCTTCAGCTCAGTGCATGGTGGGCTGAAGCTCAGGAGAATAAGAAGCTGTCTGCCAATCCCAAAGACACAAAAGTCAAGAAGAAACTGAGGAATCTTCAGCTTCATCCTGGTTTTCCCAACCCTGCCGTGGCCCAGGCTTACCTGCATCCCACCGTCGACCAATCAGACGCCTCGTTCAGCTGGGGCCGCCCACATCTGGAGCTCATTAAAGAATATCCTTCATGTTATTTACAGTGTAATAGTTGCTGTGTAACACATACGCAGCTGCGCATCGATTCCTTCTTCCGTCTGGAGCAGCAGGAGAGGCAGTCGATCCGCAGCCAGCGCCTGCGCAGAGCCGTCACCTGCCTCAAGAGGAAAGAGAGAGAGGAGGAAGAGGAGGAGGAAGAAACCTCTCCGTCTAAACAGGGCAAAACCAGCGCCTCACCATCGGACGCTGCGGGACCGTCAGCAGGAGGATTCATAGGGTCAGTGGTTCACGCAGACATACAGGACGAGACCAGGGGCGGAGAGCTCGTTCTGTGTTCGATGGGAAAACAAGAGGAAGAGGGAAACGAGGAGGAAGAGGAAGGAGCAAAAACAGATCATGACAACAAACACGTATTTATGAACGATAGCATCAGAGAGATGCAGTGCGGATTTACATTTAAAATGTCTTGTATTTATACACTGATGCTGTATAATTAACATTCTGTGTGATCATGTAAAAAAAAAAGTATGACATCAACAATATTTTCTTTACGTTAGACCTGAGGACTACTTTTCTATTTCTGTTTTTTACTATCTTCAGATGAACTTTGAAGAAAAAAAGAACA

Function

symbol description
ercc5 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

GO:

id name namespace
GO:0006281 DNA repair biological_process

KEGG:

id description
K10846 ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05935373_05943285.mRNA True 3520 mRNA 0.49 14 5934903 5943413

Neighbor

gene id symbol gene type direction distance location
CI01000299_05925030_05926229 NA coding upstream 8606 5924670 ~ 5926297 (+)
CI01000299_05903841_05913302 NA coding upstream 19591 5901464 ~ 5915312 (+)
CI01000299_05864998_05873333 NA coding upstream 61388 5863634 ~ 5873515 (+)
CI01000299_05844429_05845510 NA coding upstream 89238 5844161 ~ 5845665 (+)
CI01000299_05836707_05843149 NA coding upstream 91309 5836301 ~ 5843594 (+)
CI01000299_05955084_05970603 NA coding downstream 10803 5954216 ~ 5971417 (+)
CI01000299_05988564_06002758 NA coding downstream 44682 5988095 ~ 6003021 (+)
CI01000299_06018839_06023448 NA coding downstream 75426 6018839 ~ 6023510 (+)
CI01000299_06029307_06034445 NA coding downstream 85544 6028957 ~ 6034956 (+)
CI01000299_06074050_06097303 RASA3 coding downstream 130637 6074050 ~ 6097533 (+)
G406168 NA non-coding upstream 4974 5928182 ~ 5929929 (+)
G406417 NA non-coding upstream 34915 5899657 ~ 5899988 (+)
G406210 NA non-coding upstream 103162 5830084 ~ 5831741 (+)
G406189 NA non-coding upstream 106934 5756777 ~ 5827969 (+)
G406164 NA non-coding upstream 172587 5759224 ~ 5762316 (+)
G406427 NA non-coding downstream 5285 5948698 ~ 5948928 (+)
G406213 NA non-coding downstream 69995 6013408 ~ 6015647 (+)
G406220 NA non-coding downstream 81638 6025051 ~ 6025357 (+)
G406458 NA non-coding downstream 190430 6133843 ~ 6134043 (+)
G406463 NA non-coding downstream 192476 6135889 ~ 6136121 (+)
G406244 NA other upstream 561324 5371181 ~ 5373579 (+)
G406096 NA other upstream 1007059 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1230278 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1428986 4480553 ~ 4493116 (+)
G405842 NA other upstream 1614762 4295533 ~ 4320141 (+)
G406161 NA other downstream 294425 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location