CI01000299_05988564_06002758


Basic Information

Item Value
gene id CI01000299_05988564_06002758
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5988095 ~ 6003021 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05988564_06002758.mRNA
CTTTAAAAAAATCCTTGTCTTTTTCTTATCTTTATCTTTACCTTGACTGACTCTGAGTCTGAGAGTGAAAAGGGTCGATGCAAACAACAGATGGCAGTAATGCTTTACTAAAGTTTATGATCCAGTGTGAAGAAGAAGAAGAAGAAGAAGAAGCAAAACATCATGACTTTACTTTGTCAGGTTTATTAGGGAAAACAGCTAGTAAGTTGTATGAAGATATTATTAAATTTGTGAAAGTAAATTATATAAAAGAATTTAGCGTTTTGATTGTTTTTTTTGTTTATTTGTTTTGTTTTATTTTCCAGTTTGTTTATTTGTTATGCTTGTTTTTTTTGTTGTTGTTTTTTTTATATATTTATTTCTATTCTGTATACAAGCAAATATCCTGATCCATACTCCATTCCAGTCGGTGGCGCTAATGCACCAATAAGTTAGGTTGAAATCAGATTTAGTTGGAATCAACAACAATATGAAGAACCTTTCAAAAATCTCCCTGTTTTTATTTATAGTCTGTGTGTTTGGAGCTGATGTGGAGAGAGTGTCAGTGATGGAGGGAGATTCTCTCACTCTAGACACTCGTTTAAGAGAGAAATTTAATCGAATAAAGTGGAGATTTGGAGATTCAGGCTCAATCATTGCTGAAATTGATGGAAATGAGGCCTCATATCCTGACGATGAGAGATTCAGAGACAGACTGAAGCTGAATGATCAGACTGGATCTCTGACCATCAACAACATGAGAATCACAGACACTGGACGTTATAAAGTACAGATCGATCACAGCGATGGGACCTCATATAAGACATTCAGTGTGACTGTCCATGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACACTGAAAAACATGGAATTACTAAGGTAAAGTGGAAGTTTGGAGATCAAGTCATTGCTGAAACCTTTGGAAAAGACAAGACCATCTTATATCCCAATCCCACTGAGAGATTCAGAGACAGACTGAAGCTGAATGATCAGACTGGATCTCTGACCATCAACAACATGAGAATCACAGACTCTGGACGTTATGAAGTACAGATCGATCACAGCGATGGGATCTCATATAAGACATTCAGTGTGACTGTCCATGTTGAAGAGAGGACAGTGTTAGTAAAGGAGGGAGATTCTGTCACTCTCAAGACTGATGCTGAAATACAGAGAGATGATCAGATCCTGTGGACGTTTGGACCTCAAGACTCTCTAATAGCTGAAACAAAAAGTGAGACCGGACAGATCGCAACATATGATGGTCCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAGACGACTGGATGTCTGACCATCTCAAACATCAGATCTGAACACACTGGAGTCTATAAACTCCAGACCATCGGCAGCAGAGGAACCTCGTGTCAAAGATTCATTGTTATTGTCAGAAATAAAGTTGTGATGATATCAGTGGTGGAGGGAGAATCAGTCACTTTATACCCTGACACTGAAGTACAGAAAGATGATCTGATCGTGTGGACATTTGGATATGAAGACATTCGCATCGCTCAAATGACTGGAAAAACCAGAGAAACATATGAAGGTACTGATGGGAGATTCGGAGACAGACTGAAGGTGGACAAGAGGACTGGATCACTGACCATCAAGAGCACGAGAACTGATCACTCTGGACTTTACAAACTACAGATGTGCAGCAGCAGCAGAGGAACCACAAACAAGACATTCAAAGTTGCTGTAAATTTGAAGAAAATATCAGCCAAGGAGGGAGATACTATCACTCTGAGGACCAATACTGTAGTGCAGAGAAAAGATCAGTTAGAGTGGACGTTTGGAGATGAAAACTCTATCATAGCTGAAATCAAAGGAGGGATTGGAAAGATCTCTACATTTGACATTGCCGATGGGAGTTTCAAAGACAGACTGGGGCTGGATGAGAAGACTGGATCACTGACCATCAAAAACACCACAGCTGAACATGCTGGAGTCTATACACTGAAGCTCGTCACCAGCAAAGCGACAGCAATTAGGAGATGCGACGTTGTTGTCAGAATGTTGAAGATATTAGGGAAGAAGGGAAACAATGTGACTCTAAATCCTGATACTGAAATACAGAGAGATGATCTGATCCTGTGGATGTTTGGAGCTGAAAACAATCTCATAGCTCAACTGATTGGAGAGACCAAAGAGACGACATACGCTGATGCAGACGAGAGATTCAGAGACAAACTGCAGCTGGACAAGAACACTGGATCTCTGACCATCAGGAACATCACAAATGGACCTTATAAACTACAGATCATCAGCAGCAGAAGGTCCTTGTCCAGGAAATTCAGAGTTTTCATGTGTTGTGAGTCCGGTCCGAAGACAGTGTCAGGGATGATGGGAGAATGTTTAATTCTGATCACTGATTTGAATGTTGAAAGTGATGAGAAGGTAGAGTGGACATTTGAAGATGAAATTATCACAACTGGAATGAATGGAGACTCAAATAAGACTTCATACTGTGATGATGAGAGATTCAGAGACAGACTGGAGCTGCACCATCAAACGGGATCTCTCACCATCAAAAACACCAGAACCAGCGACACTGGAGTTTATCAACTAAAGTTCTGCAGCAGATTCGGAAAGAACATTTGCTGGGAATTTAGTGTTACTGTCAGTGGGACAGATCTAAAAGATTCTGGAAATGAAGGGGGAAAAAAGCTGAAAGCTGTCAGATAATATGAAATGAATCTGAATGAATGAAAAAGTGTTTATCCTGAGAGAAATAGATCTTAATGCATCTAAATTACAGAAGTAAACTTTCCAGTTGCTTTTGAGTGTTGTGGAGACACAAATATAATACTGTCATGTTTATTTGTGAGAAAAGAATAAGCACTCAAACAAGACTGAACTTGGTAATTTGTAATTTTGATGTCTGACTACAAGATTTTGATGTCTGTCTCTCATATTCTTTGTATTTCAAATTACACAGGAAACAGTGA

Function

NR:

description
hypothetical protein cypCar_00048118

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05988564_06002758.mRNA True 2979 mRNA 0.39 9 5988095 6003021

Neighbor

gene id symbol gene type direction distance location
CI01000299_05955084_05970603 NA coding upstream 16678 5954216 ~ 5971417 (+)
CI01000299_05935373_05943285 ERCC5 coding upstream 44682 5934903 ~ 5943413 (+)
CI01000299_05925030_05926229 NA coding upstream 61798 5924670 ~ 5926297 (+)
CI01000299_05903841_05913302 NA coding upstream 72783 5901464 ~ 5915312 (+)
CI01000299_05864998_05873333 NA coding upstream 114580 5863634 ~ 5873515 (+)
CI01000299_06018839_06023448 NA coding downstream 15818 6018839 ~ 6023510 (+)
CI01000299_06029307_06034445 NA coding downstream 25936 6028957 ~ 6034956 (+)
CI01000299_06074050_06097303 RASA3 coding downstream 71029 6074050 ~ 6097533 (+)
CI01000299_06100005_06114087 NA coding downstream 96696 6099717 ~ 6114463 (+)
CI01000299_06116505_06128180 GAS6 coding downstream 112617 6115638 ~ 6128450 (+)
G406427 NA non-coding upstream 39167 5948698 ~ 5948928 (+)
G406168 NA non-coding upstream 58166 5928182 ~ 5929929 (+)
G406417 NA non-coding upstream 88107 5899657 ~ 5899988 (+)
G406210 NA non-coding upstream 156354 5830084 ~ 5831741 (+)
G406164 NA non-coding upstream 225779 5759224 ~ 5762316 (+)
G406213 NA non-coding downstream 10387 6013408 ~ 6015647 (+)
G406220 NA non-coding downstream 22030 6025051 ~ 6025357 (+)
G406458 NA non-coding downstream 130822 6133843 ~ 6134043 (+)
G406463 NA non-coding downstream 132868 6135889 ~ 6136121 (+)
G406461 NA non-coding downstream 146578 6149599 ~ 6151122 (+)
G406244 NA other upstream 614516 5371181 ~ 5373579 (+)
G406096 NA other upstream 1060251 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1283470 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1482178 4480553 ~ 4493116 (+)
G405842 NA other upstream 1667954 4295533 ~ 4320141 (+)
G406161 NA other downstream 234817 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020872 CABZ01061495.1 coding NC_007133.7 CM002906.2 8337699 ~ 8353386 (-)