CI01000299_06116505_06128180 (GAS6)


Basic Information

Item Value
gene id CI01000299_06116505_06128180
gene name GAS6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6115638 ~ 6128450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06116505_06128180.mRNA
GTTTAAAGGCACATGAATGTTTCCATATGACAATAACTGGACACTGGATCTTCATCTCTGTGAAGCTGAAATGAGATATACAGTGTGTTTTACAGATGGACACTGTGACCTGACCTCAATGTTGCATAAAATAACAGATGGGAAACGGGAGGGAGGAAGAGAATGAAAACACTGGGTCAGAAAAACAAGAGGAGAGCGAGTGAGGTAAACACTGAGAAAACAGCTGCAGGAGGAAGAATGTAACCTCACATCAGAGTCCGATCAACAAACAGCTGTGACAGAGTGTAGGTCTGTCCAGTTGAAATAATACTAACAATATCAAAGTTATTCTTATGTTTACTTGATAAAAATAAAAAGTAAAGATTTCACAGTGGAAAGACACGAGCTGAAGGACGACGTTTGTATAACTATACTAAAAGACTTTTACTTGATAAAAAGTCCAAACTATCAATTAGATGTCAACACTGATGTTATTAATAGATAACTGGAACAGTTGAAAAAATGAAACTTGTGTCATCATTGATTCATGTCATTCCCCCCACGTGATTTTCTGTATTCTGTGGAACTCTGCAGAGGTTTCACTGGAAGTCTGTCGCAGCTCTCAAATGTGTCGCAATCAGTTCCACTTAGAAATAATATATATCTGCTGTGATATTCATAAACCGTCGAATCTGCCGCTCACGTTTGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGGAGCCAAAATACAGAGAGTGCACAAGAGAGAAAGAGAGAGAGGCTGAATGCGCTGCAGAGACGCTCGTGTTCGGGGTTGAATGTGGCGGTTCAGTGCAGGATTCTGATCCAGAACGAGCGAAAGTTTGCCGCAGAATGAACATGAGAGAGTTCGTGTCGAGCTGCTGCTTCGTCCTGCTGTGCATCGGCTGCTCCTCGCAATTGTCCGTGTCGCCGAAGCAGGCGAACGAATTTCTCCGCAGACACCGGAGGGCGAACCAGGTGTTCGAGGAGACCAAGCAGGGTCACCTGGAGAGGGAGTGTGTGGAGGAGAGATGCACTAAAGAGGAGGCGAGAGAAGTGTTCGAGAATGACCCTGAGACGGATTATTTCTACCCCAAGTATCAGGCTTGTTTGGACAAATTTGGAGGCTCTGATAAGAAGAAATCGGATCTCATCACCTGCGTCCACAACATTCCAGACCAGTGTTCCCCGAATCCCTGCAATCGTCTCGGGATGGTGCGCTGTGAGGACAAAAAGGGCGGATTCCACTGTCACTGTTTCACCGGATGGAGCGGCGTCAGGTGTGAGAAAGATGTAGACGAGTGCAGCAAAGACAATGGAGGCTGTGAGCACGAGTGTGACAACACCATGGGAAGTTACCACTGCTCCTGTCATGACGGATACAGGCTCTCGGGTCACCACGCCTGTCTGGATGTGGACGAGTGTGTGGAGACTCCAGATGTTTGTGGAACCGCGCGCTGCTCCAACCTCATCGGGAGCTACGACTGCCTATGCGAGGAGGGCTACGTCTACGACAACATCACCAAGAGCTGCGCAGACGTGGACGAGTGTGAGACACGTGTGTGTGAGGAGGAGTGTGTGAACACAGCGGGAAGTTTCCGCTGCTACTGTGATGGACGGCAGGGGAAGAGACTGGGCCCAGATTTCAGGAGCTGTGAGACCATCGAGCTTCACCTGCCGCTGGACATAAAGAGGAACTCGCGCTCGCTGTATCTCGGACGCATGTTCAGCGGGATTCCTGTGGTCCGGCTGCGCTTCCGCCGCAGGGTCCAGACCGGATTCACAGCAGAGTTTGACCTCAGGACCTACGACCCCGAGGGCGTGATCTTCTTCGCCGGCGGCCACCTAAACAGCTCCTGGATTGTTCTGGTGATGCATAATGGGAAACTGGAGCTGCAGCTGAAATACGGAGCTGTGAGTCGAGTGACGAGCAGTGGACCGCTGGTCAATGACGGCCAGTGGCATAAGATCTCCGTGGAAGAGCAGGGGCGGAGCCTCGTCATCAAGATCGACAGGGAGGCGGTGATGAAGATCGCAGTGAACGGGGATCTGTTCACACTCAATAAAGGCATGCATGAGCTCAACCTGACGGTGGGCGGCGTTCCCTTCAGAGACGACGGGCTGGTCAGCAGGGTTAACCCTCGACTGGATGGCTGTATGAAGGACTGGCGCTGGTTAACTGGTGAAGACACGTCCATTCAGGAAACCATCCGGAACAACGAGCGCATGCAGTGTTACGCTGTCGAGGACCACAGCGCCTTCTACCCCGGACACGGCTTCGCCTACTTTAACCACAGCCACGGGGACGATCAGAAGCTCCATGTGCATATGACTCTGCGTCCCGCCTCCTCTGTGGGCGTCCTGTTCGCTCTGCACGTGCTGGTGTCGTTCGGTGACGTGGTGGTGGCCAGTGTCCCAGTGAACCTGTGTGACGGTCAACAGCACACAGTGACAGTTAATGTGTCCGGGAACAGCCCCGAACTGGAGGTGGACGGGCAGCGTGCTCAGATTGAGCTGGTGGAGAATGTAGACGCTCTGGATCTGACGTCCTCGTACAGCACCTTTATAGGAGGCATCCCAGTGTGGTGCTTTAGTGTTATGTTTGCTGATTTTACCAGCATTGGTGAATGTTGTGTACAGGCTCTGAGTGAATCTGTAGACTCTTCACATGTGCTGAATCTGTTGTTTGTTGGCTTGCGCAGATGTTTCGTTGGTGTCCACCCCAGTGTCGGCCTTCTTCACGGGCTGCATGGACGTGAAAGTCAACGATCAGCTGCTGGATGTGGACGAAGCCCAACACAAACACAACGACATCCGCTCTCACTCCTGCCCTCTGGTGAGCACGCAGCAATAACAGCCGGACGTCGCATCAGACTCCATCAAAGTGCTTCCGACTGCTGAAGGGATGTTTAATCAGGATCTGGTCAGCTGATCCACGAAGGCCTTAGTCAAGCCCGAGATCCTCGCCACACTCGCGTCACGCACATATAGCACAGCCAGAGACGCGTTCACACTGTATCGATGTATTATTACTCACTGACACGCTTACATTAGACCAATCAAACACAAGCTACTGAGAGTGTGCTGTAAAATACTGTACCTGTACATACGCCACTGTAAAATGCTTTTAGAGGAGGACTAAAAACAGCCAACGACCTTCAACGCTCATCA

Function

symbol description
gas6 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in extracellular region. Is expressed in heart; nervous system; and neural tube. Orthologous to human GAS6 (growth arrest specific 6).

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K05464 GAS6; growth arrest-specific 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06116505_06128180.mRNA True 3186 mRNA 0.51 15 6115638 6128450

Neighbor

gene id symbol gene type direction distance location
CI01000299_06100005_06114087 NA coding upstream 1175 6099717 ~ 6114463 (+)
CI01000299_06074050_06097303 RASA3 coding upstream 18105 6074050 ~ 6097533 (+)
CI01000299_06029307_06034445 NA coding upstream 80682 6028957 ~ 6034956 (+)
CI01000299_06018839_06023448 NA coding upstream 92128 6018839 ~ 6023510 (+)
CI01000299_05988564_06002758 NA coding upstream 112617 5988095 ~ 6003021 (+)
CI01000299_06177821_06180061 NA coding downstream 49371 6177821 ~ 6180191 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding downstream 89166 6217616 ~ 6221071 (+)
CI01000299_06223295_06227054 ADPRHL1 coding downstream 94442 6222892 ~ 6227186 (+)
CI01000299_06233485_06239858 NA coding downstream 104122 6232572 ~ 6239902 (+)
CI01000299_06269853_06274289 PCID2 coding downstream 141152 6269602 ~ 6274393 (+)
G406220 NA non-coding upstream 90281 6025051 ~ 6025357 (+)
G406213 NA non-coding upstream 99991 6013408 ~ 6015647 (+)
G406427 NA non-coding upstream 166710 5948698 ~ 5948928 (+)
G406168 NA non-coding upstream 185709 5928182 ~ 5929929 (+)
G406417 NA non-coding upstream 215650 5899657 ~ 5899988 (+)
G406458 NA non-coding downstream 5393 6133843 ~ 6134043 (+)
G406463 NA non-coding downstream 7439 6135889 ~ 6136121 (+)
G406461 NA non-coding downstream 21149 6149599 ~ 6151122 (+)
G406470 NA non-coding downstream 54744 6183194 ~ 6183531 (+)
G406162 NA non-coding downstream 61329 6189779 ~ 6197674 (+)
G406244 NA other upstream 742059 5371181 ~ 5373579 (+)
G406096 NA other upstream 1187794 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1411013 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1609721 4480553 ~ 4493116 (+)
G405842 NA other upstream 1795497 4295533 ~ 4320141 (+)
G406161 NA other downstream 109388 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000913 gas6 coding NC_007112.7 CM002885.2 312784 ~ 338445 (-)