CI01000299_06208641_06214104 (TMCO3)


Basic Information

Item Value
gene id CI01000299_06208641_06214104
gene name TMCO3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6208612 ~ 6214104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06208641_06214104.mRNA
ATGCGAGCCCTGTGTGCAGTGCTGTGCCTCGGCCTGGTGGCGGCGCTGCAGCCGAAGCAGGTCCACAAAGCGCAGCCCGGCGTCTACGGACAGCAGTGGGTGACGGAGAACTGCAGGCGGCTCTCCATCCTGCTGAGGCAGAAGAACTCAGCCGTCCGTAAGCTGGGCGCGGCTGCGGTGGCGCTGGAGCGGGACGAGACGCTGGCGCAGCCGGAGAAGCTGTTCCGCGTTCACACGCTGGAGGTGTTTCAGCGCGAGCTGAACGAGAGCGAACGCTCCCTCTTCCAGGCCGTGGAGGGGCTGCAGAGGGTGCTGAAGGGGAACTTCAGAGACGTGGTCAACATGAAGGACAGCAGCCGGCAGAGACTCCAGTCGCTCAGGGAAGCCGCCATCAAGGAGGAGCAGGAGTACATGGAGCTGGTGGCAGCGGAGAAACACCAGCAGGAGGCGCTGAAGGTGGCACAAGACCGAAACAAAACCCTGTCCATGCTGGATGAGATCCTGGAGGATGTGAGGAAGGCCGCAGACCGGCTGGAGGAGGACATCGAGGAGCACGCCTTCGACAACAACAAACAGATGAAGGGGGTGAATGTGGAGGCTGTCCTGAGGGTGGAGGAGGATGAGGAGGACGGGAAGAGGAAGAACGTGTCACGGCAGGAGGACAAAGGCAATCTGGGGCTCAGCATGCTGATCGACTCGCAGAATAACCAGTATGTGCTGACCAAACCACGAGACTCCACCATGCCCCACGCCGACCACCACTTCATCAAGGATCTGGTGTTCGTGGTCATGTTGTCTCTGCCGTGCGGGTGGCTGTGTACACTGATGGGACTGCCGCCCATGTTCGGTTACATCATCTGCGGGGTTCTGCTCGGCCCATCAGGACTCAACAGCATTAAATCGATGGTTCAGGTGGAGACGTTAGGAGAGCTGGGCGTGTTCTTCACTCTTTTTGTGGTCGGTCTGGAGTTTTCACCCGAACGCCTCCACAAGGTGTGGAAGATCTCGCTGCAGGGCTCTGGATATCTGAGTCTCCTGATGGTGGCCGCTGGCCTGCTGTGGGGTCAGATGCTCGGACTTCACCCCACACAGACCGTCTTCATCTCCAGCTGTCTGTCTCTCTCCAGCACTCCTCTGGTGTCTCGCTTCCTGGCCGGAGGATCCAGAGGAGAGTCAAAGGAGGGTGAGCTGGACTACAGTAGTGTTTTGCTGGGCATGCTGGTCATGCAGGACGTGCAGCTCGGTCTGTTCATCGCTGTCATGCCCACATTGATTCAAGGAGGAAATGGAGACACAGACGGTGTGCTGATGGGAGTGTTGCATGTTCTGGTTCTGCTGACTCGTGTCCTGGTGTCGCTGGCGGCCGTGCTGCTGATGTGTTGGCTCCTGCGCTCTCATCTGATTGGTCCGTTCTACAGGAAGCTGCATGCGGAGAGCAAAGGGAACAAGGAAATACTAGTGCTGGGCACGAGTGCCTTTGTGTTCCTGATGCTGACGGTGACAGAATTTATGGATGTGTCTATGGAGTTGGGATGCTTCCTGGCTGGAGCGCTGCTCTCATCGCAAGGTCACATGGTCACAGCTGAGGTCATGAGCTGCACTGAACCAATCAGAGACTTCCTGGCCATCATCTTCTTTGCATCTATTGGGCTGCACGTGTTCCCGACCTTCGTCCTGTACGAGCTGACCATCCTGCTGGTCCTGACCTTCTCGCTGGTCATTATGAAGTTCATCATGGCGGTGCTGGTTCTGTCCGCCATCCTTCCTCCGGGCTCGCGTCACATCCGCTGGCTGGTGTCGGCCGGACTGGCGCAGGTCAGCGAGTTCTCCTTCGTCCTGGGCAGTCGTGCTCGTCGGGCCGGCATCATCTCCAGAGAGGTGTATCTGCTGGTTCTCAGCGTCACGACTCTAAGCCTCCTCCTCGCTCCGGTGTTGTGGAGAGCCGCCACGCTCAAATGCATCCCGCGGGCCGAGAGGAAGCCGCTCACCTGAGTCTCTCCTGAGGAGACGCTCACATTAAA

Function

symbol description
tmco3 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06208641_06214104.mRNA True 2021 mRNA 0.59 12 6208612 6214104

Neighbor

gene id symbol gene type direction distance location
CI01000299_06197276_06199730 TFDP1 coding downstream 8882 6196606 ~ 6199730 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding downstream 13597 6185488 ~ 6195015 (-)
CI01000299_06145156_06154533 NA coding downstream 54079 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 63744 6129073 ~ 6144868 (-)
CI01000299_06037407_06054548 TPP2 coding downstream 154064 6036217 ~ 6054548 (-)
CI01000299_06242885_06246604 LAMP1 coding upstream 27892 6241996 ~ 6246604 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 41753 6255857 ~ 6266210 (-)
CI01000299_06268189_06268676 NA coding upstream 54085 6268189 ~ 6269395 (-)
CI01000299_06274590_06278765 PROZ coding upstream 60323 6274427 ~ 6279132 (-)
CI01000299_06281861_06289368 NA coding upstream 65279 6279383 ~ 6290025 (-)
G407975 NA non-coding downstream 25077 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 62688 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 94122 6108478 ~ 6114490 (-)
G407912 NA non-coding downstream 101359 6099848 ~ 6107253 (-)
G407909 NA non-coding downstream 109154 6093291 ~ 6099458 (-)
G407923 NA non-coding upstream 6662 6220766 ~ 6222379 (-)
G407939 NA non-coding upstream 12308 6226412 ~ 6232275 (-)
G407986 NA non-coding upstream 175272 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 177940 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 203022 6417126 ~ 6432767 (-)
G407805 NA other downstream 372623 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 752504 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1279794 4913373 ~ 4927715 (-)
G407413 NA other downstream 1657891 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 317897 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014439 LOC107748345,LOC107577958 coding CM030128.1 CM030128.1 13882719 ~ 13903655 (+)