CI01000299_06269853_06274289 (PCID2)


Basic Information

Item Value
gene id CI01000299_06269853_06274289
gene name PCID2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6269602 ~ 6274393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06269853_06274289.mRNA
GCATATATACACGTAATATCGCTTCCGGTCATTATGGAAAACAAAGAATCTGTAAATGAATGTGTGAATTAGCAGCTGCGCTACATCGAAGGATTCTCAATACTTCAGGATGAAAACTGTTCATAACTGTTCTTCAGGATGGCCTCTGTGTTTGTGAATGTTGATGTAGACAGCAGCGCTTCTGCTCATTATAAACACAATGAATGAATGCTCTTGTTTCAGCGCTACTGGATCAGAGGTCAGAGGTCAGGATGGCTCACATCACACTCAATCAGTACCTGCAGCAGGTTCTGGAGGCCATCGACAGCAGAGACGGGTCATTCTGTGCGGAGATGCTGTCCTTCAAACACCCGCATGTGGCCAACCCTCGTCTGCAGCTGTCCAATCCAGAGGAGAAGTGTCAGCAGCTACTGGAGCCGCCGTACGACGAGATGGTGGCCGCTCATCTCAGGTGCACCTTCGCTGTGTCCAATCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTGGTTCAATATCCTTTTATTCAGGATCTTCTAGCGGCTCTGCCGATCATGTTTGCCGTGACCCTCGACCTCAGGATATTTGCCAATAATGTGAGTGGAACTCATTCATCTGTGGATCATCGCGCTGGGATCAATGACTCAAAGAAATGGGGAATGTTGTTTCTGATCAATCAGCTCTTCAAGATCTATTTCAAAAGGAACAAGAGGCTCATCCTCATCTACCTGCTGCCCGTCAAGATGCTGCTGGGTCACATGCCCACACATCAGCTGCTGAAGAAGTACGACCTCATGCAGTTCGCTGACGTCACCAAGGCCGTGAGCGAGGGGAACCTCTTACTGCTCAATGAAGCTCTGGTCAAACATGAGACCTTCTTCATCCGCTGCGGCATCTTCCTCATCCTGGAAAAGCTGAAGATCATCACTTACAGGAACCTCTTTAAGAAAGTGTATCATCTGCTGAAGACGCATCAGCTTCCTCTGGACGCCTTCCTGGTGGCGCTGAGGATGATGAAGGTGGAGGACGTGGACGTCGATGAAGTGCAGTGCATCCTCGCCAACCTCATTTACATGGGTCACATCAAGGGTTATATTTCCCATCAGCACCAGAAGCTGGTCGTCAGCAAGCAGAACCCGTTTCCTCCACTGTCCAGCGTATCCTGAACATCAGCTCCCAGAATGCACCTGTTACCAGGAGAAAACACGCTGTTCTTCAGTGATTCATTCTTATTTTATGTTTGCCCTTGTTTTTTTTTCTATTATGTCAA

Function

symbol description
pcid2 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06269853_06274289.mRNA True 1273 mRNA 0.48 11 6269602 6274393

Neighbor

gene id symbol gene type direction distance location
CI01000299_06233485_06239858 NA coding upstream 29700 6232572 ~ 6239902 (+)
CI01000299_06223295_06227054 ADPRHL1 coding upstream 42416 6222892 ~ 6227186 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding upstream 48531 6217616 ~ 6221071 (+)
CI01000299_06177821_06180061 NA coding upstream 89411 6177821 ~ 6180191 (+)
CI01000299_06116505_06128180 GAS6 coding upstream 141152 6115638 ~ 6128450 (+)
CI01000299_06312445_06318421 NA coding downstream 37647 6312040 ~ 6318421 (+)
CI01000299_06322253_06326504 CREG1 coding downstream 47860 6322253 ~ 6326562 (+)
CI01000299_06396938_06400105 NA coding downstream 122545 6396938 ~ 6401342 (+)
CI01000299_06416707_06422267 NA coding downstream 142314 6416707 ~ 6422648 (+)
CI01000299_06424909_06425694 NA coding downstream 150418 6424811 ~ 6425733 (+)
G406196 NA non-coding upstream 3372 6265754 ~ 6266230 (+)
G406478 NA non-coding upstream 62558 6206834 ~ 6207044 (+)
G406162 NA non-coding upstream 71928 6189779 ~ 6197674 (+)
G406470 NA non-coding upstream 86071 6183194 ~ 6183531 (+)
G406461 NA non-coding upstream 118480 6149599 ~ 6151122 (+)
G406142 NA non-coding downstream 5026 6279419 ~ 6286426 (+)
G406172 NA non-coding downstream 36015 6310408 ~ 6311699 (+)
G406480 NA non-coding downstream 48792 6323185 ~ 6323623 (+)
G406494 NA non-coding downstream 117687 6392080 ~ 6392356 (+)
CI01000299_06541306_06541820 NA non-coding downstream 266869 6541262 ~ 6541985 (+)
G406244 NA other upstream 896023 5371181 ~ 5373579 (+)
G406096 NA other upstream 1341758 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1564977 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1763685 4480553 ~ 4493116 (+)
G405842 NA other upstream 1949461 4295533 ~ 4320141 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location