CI01000299_06312445_06318421


Basic Information

Item Value
gene id CI01000299_06312445_06318421
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6312040 ~ 6318421 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06312445_06318421.mRNA
TTATAAAAAGCCTTTAGTTCAATAATTTTGTCCGGTGAGGTTATAAAGTTTGCATCAAATGTCGTGCTGTTGAAGTTTCTCTCTGTGATTCACCAGAGCTTCGGTTTGACTGAATCGGTTTGAAGAATCAAATCACATGTGGATGATTCTTCAGTGATGCCGCGTTGTTTCATTCACTTTAATGAAGTCGTTTAAGTAAGAAATGTGATATTTTCATTCAGTTTTCATAAGCGTTTTAGCATTTCAGTGATGTTTATTGTCTTTGGCACATAAAGTTTTATTACTAATCAGCGTCTTCGTGAGATAATAGAATAGTTGAGTTATTGACATGTCAGATCTATTCAAATGTTTCTTGTTTGTGTCTCGATCTCTTCTCAGCTCATCTGAGGATCTGAACTGATCGAGATGATGATGGAGTGTGAAATCGAGCGAGCGAAGATCTTCTGGGAGGAAGTGGATGTTGATGGAGAGTTTGATGAGCTGATGGAGGTTCTTTCACGTTTAAGAGATGCGATCAGACACAACACTGCGACAGACAGAGAGTATGTTCATGCCATGAAGATCATTCTGGAGTCTAAACTGGTCGTCCTCAGGAACGAAGCCTTCGAAGAGGTGCTGATCGATGAAGATATTCTGACCGTGACCGTGTCAGAGTCTCAGTGTTCTCCCGAGAGTTTGAGGAACGGCGTGGAGACGGAGGACGTCCTGCAGAAAGACAGCTCACGAGACGTGGAGTCGAGCTCAGACTACAGTCAGATGTCTTCAGCCAGCAGAAACGACGGCGTGAGTGGTCAGGATCCGACGCTGCTTCTGTCTCCTCTGAGCTTCTGTTCTGAAGAGCCGAGGTCTCCCGTCCCGCTCGTCTACCAGCCGCACGACTGCAGCCCGGCGTGTGTCCCGCAGCTGCCCGCTCACGCCGACCGCTTCCTGGGCCACAACCCGCTGCGAGTGCCCATGCTGTGCCAGTTCCAGCGCCACTGCGTTCGGGTTCGAGCCGCCAGTGGCGAGCAGGAGGACGAGTGTGACGCGCAGGACGTGATTTACAAAGCGCCGTGTGGGCGGGGCCTGCGCTCCATGGAGGAGGTGCTTCAGTTCCTGCTGCAGTCGGACACTCTGGGCGTGTTGCAGCCGAACAATTTCAGCTTCAATTCGCAGGTTTTTCCGGAACATCCGGCACGAGCTCCCGCCTCGTCTGCGCTTCTGTTCGAGCGAGACCTCAGCCACGGGATCGAGCCGGTTCCCGTGCCGCTGTTCAATGAGGTGGACGGGACACGCCTGAAAGAGTTTCGCTACCGCAAAGAGCGCTGGCCGCACGGCTGCTTCCTCAGCGCAGCGCCGTTTTTCACAGCGTGCTGCGACTGCGAGGACGGCTGCGCAGATGATCAGAGCTGCGCTTGTGTTCAGCTGACGGTCAGAGCCGGAGGACACGGTCATGCTTACAGACACCAGCGACTGAGCGAGCCCCTGAGTGCAGGGTTGTTCGAGTGCGGCCCGTGGTGCAGCTGTAAAAAGAGCCTCTGTCAGAACCGTGTGGTGCAGAAGGGGCTGCGGGTGCGGCTGCAGGTGTTTCGTACGCTGGACCGCGGCTGGGCCGTACGCTGCTCTGACGACCTCGACAAGGGAACCTTCATCTGCATCTATGCAGGCGTCGTCCTCAGACTGGAGCAGAGCGCGGAGGAGCCGCCGGATCTCCGCAGCAGAGAGGCGCCCGTGTCCGACGATGAGGTGGAGGTGGTGGAGGAGTGGACGCTTCCCACAGGCCCTAAGGAGACGGTCCCTGAGATGCTGGACTGCTCTCCTCCGCTGTATGTTCCTGTGATCCAGAGACCTGCGGATCAGAGTCCAGGCGCTCCGCTCACGGACCAGCAGCAGTCACAGGACTGCAGTGAGACAGAGCATGAGAAGTGCGAGGAGGTGTTGAGTAAGAAGCCCAGATTAGCACTCACCGGATCGAACGGACACAACGACAGAGCTGACATCACGTCACACATGCATCAGAGACTCAAACAAGACAAAATGTATTACCTGGACGCCTCTAAAGAAGGAAACGTGGCCCGATTCATCAACCACAGCTGTGAGCCGAACCTCTTCATCCAGAACGTCTTCGTCGACACACACGACCCACAATTCCCTCTCATCGCCTTCTTTACAAACAGGTCAGTTAAAGCTGGAACTGAACTGACCTGGAACTACTCGTACACACCGGGCAGTGACCCGGATCACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06312445_06318421.mRNA True 2226 mRNA 0.54 11 6312040 6318421

Neighbor

gene id symbol gene type direction distance location
CI01000299_06269853_06274289 PCID2 coding upstream 37647 6269602 ~ 6274393 (+)
CI01000299_06233485_06239858 NA coding upstream 72138 6232572 ~ 6239902 (+)
CI01000299_06223295_06227054 ADPRHL1 coding upstream 84854 6222892 ~ 6227186 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding upstream 90969 6217616 ~ 6221071 (+)
CI01000299_06177821_06180061 NA coding upstream 131849 6177821 ~ 6180191 (+)
CI01000299_06322253_06326504 CREG1 coding downstream 3832 6322253 ~ 6326562 (+)
CI01000299_06396938_06400105 NA coding downstream 78517 6396938 ~ 6401342 (+)
CI01000299_06416707_06422267 NA coding downstream 98286 6416707 ~ 6422648 (+)
CI01000299_06424909_06425694 NA coding downstream 106390 6424811 ~ 6425733 (+)
CI01000299_06430810_06434834 NA coding downstream 109630 6428051 ~ 6435178 (+)
G406172 NA non-coding upstream 341 6310408 ~ 6311699 (+)
G406142 NA non-coding upstream 25614 6279419 ~ 6286426 (+)
G406196 NA non-coding upstream 45810 6265754 ~ 6266230 (+)
G406478 NA non-coding upstream 104996 6206834 ~ 6207044 (+)
G406162 NA non-coding upstream 114366 6189779 ~ 6197674 (+)
G406480 NA non-coding downstream 4764 6323185 ~ 6323623 (+)
G406494 NA non-coding downstream 73659 6392080 ~ 6392356 (+)
CI01000299_06541306_06541820 NA non-coding downstream 222841 6541262 ~ 6541985 (+)
G406161 NA other upstream 11532 6237838 ~ 6300508 (+)
G406244 NA other upstream 938461 5371181 ~ 5373579 (+)
G406096 NA other upstream 1384196 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1607415 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1806123 4480553 ~ 4493116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038719 setdb2 coding NW_003334027.1 KN150699.1 8780 ~ 12431 (+)