CI01000299_06352251_06359190 (DUSP27)


Basic Information

Item Value
gene id CI01000299_06352251_06359190
gene name DUSP27
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6351435 ~ 6360203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06352251_06359190.mRNA
TGTTTTATTTTTATGTTTGTTCTTGACTTTGAAGCAGTTTCATATGTGCTCTTGATAAAATAGTGTCATATATAGAGAGATTAAGATTAATGTTACTATGAGAAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGAGAGACTGAAGCACTGTGTTATCTGTTCAACACTGTTTCTCTTTCTTTGGATTTCAGTGTCAGTTCAAGTTTCAGAAACATTTCCTCTTGGTTTTCCTCTCTGATGGGCCATTTCTCGTTGGCTGTGTGTCGTGTCTGTGCCTTTAATCGTGTGGGTTTCCCTGTTGTTATAAATGTACATAATCACTCTAGAACACTGTTATACCGGCAGATGAACTACAGAAACACATTAGAAATATTCTGATATATTTAAAGAGAGATTTATACAGTAATAAATACGTCCGCTGTCACAGAAATGCAGTATATATTCTAATAACATGTTTTTGTACGTTAGATTATTTTTATGTGCTTTATTCTGTAAGCTTTTGTTTCTCTCATAGATTTTGTCATCTGTGGGAAAATCACCTTCCCATGTGGTCAAATAAATCCGATGAGCTGAAAGACAGTGTGGGATGATGGGGTTTTTGTGGTTCACACAATCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACGATTGTTGTACAACAATTGACTCATTATAAAACAATAACAACACTAAATGAATTCATTATTTTTGTGAAAGTATTGAAACATAATGTCAAGACCCTTGCGTAAAAGGTAAAACAAAATGCTTTATAATTAATAAATAATAAAAGAAAGGAATGTGAACCATGTGAAACATTTTAGATGTGAAAAGTACAAAGAAACCGGGAGACATTTTAATATTAATTTAATTTCAGCTATATTTTTTTATTAAGCGCAACAAATGAGAAAATTCATTTGAACACATGTATGCAGGTAGAGCTCAGACAGAGGAAGAATGATTCTTATCGTGGTGTCAGTCGATGATAACAGTGTGATGGCGTCGTCCGGTGAGAGCAGTGCTGCGGAGGATCAGCAGGTCCCACATCAGGATGAAGCAGCGAGTGTTAAAGACGTTCAGTCGCATTACTTGCGCTGTCCTTCGCCCAGCTTCTCCATGATGTCCGATCGCTTCTCCACCATTTCGGACCGTTTCTCCATGATCTCGGGCTCAGAAGCAGAAAGTATCTTCATGGACCCGATTCATCTGTCATCCTCCATCGCTGCCAAGAAGATCATCAGTGAAGAGCTGAAGTCCAGAGACGTCAGGACGCCGTCGACCCCTGACAGCATGCTGGAATCCGCCGAGCAGCTGATGGTGGAGGATCTGTACAACCGGGTGAAGGACATGATCGACGACCGCAGCCCCTACAACACGCCGTGTGTGCTGGACATCCAGAGAGCGCTGATCCACGACCGGCTGGAGGCTCCGTTCAACCCCGTGGATGAAGTCTGGCCCAACATCTTCATCGCAGAGAAGTCCGTGGCTGTGAACAAAGCCCGTCTCAAACGCCTCGGCATCACTCATATTGTGAACGCCGCTCACGGCACCGGCGTCTACACGGGCGAGCTGTTCTACCAGGGCATGAACATCACCTATATGGGCATCGAGGTGGATGATTTCCCAGATGCGGACATCTCTCCTTACTTCCGCACGTGTGCTGAGTTTCTGGATGACGCTTTGCTGACACACAGGGGCAAGGTGCTTGTGGACTCGATGATGGGCGTGAGCCGGTCAGCCGTGCTTGTCGCTGCTTACCTCATGATCTTCCAGAACATGAGCATCATGGAGGCCCTGCTGGAGATCAGGAAGAAACGTGCCATCAACCCCAATGAAGGTTTCATAAAGCAACTGCGGCAACTCAACGAGACCCTAATGGAGGAGCGAGATGAAGACGATGACGACACCCTCAGTCAGTGCTCTGTGATTGACACCCGTGCTCGTCTCGATGAGGAGGAGAGCATGTTTGGAGTTAAAGCCGACTCTATTATGGTGGATGAGGAGGAAGACGGCGGCAGCGTCATGAGCAGTGTGGCTTCTTCTGCTGCTGCCGCTGCGCTGAGAGCAGGACTTCTTGGCGGCCCAAACAAACCCGAGCTGGAGGTGACCGCAAAGGACCCGACGCTCCCTGGAAAAGCCAGGGATGATGAAGACGGGGATGTGGACAGCATGATAAGGGAGTGGCAGAAGCGCAACGAGAAGTACCAAAATGAGGACTGGTGGGAGGCGCAGCTACTGTGCGACGGGGAGGATGGCGAGTCTTTGCTGGGCGAGAGGAAGCAGCCAGCCGTGCGACCGGAGGACCTGGAGAGCGTGACCAGCGAAGATGTACAAATGGTGAAGGAACGCATCAGACGTCGCCCCCGTCGACCCGCTTCAGATTCTGGATCCACAACCAGCTGCAGCAGTTATGCCGATCTCTGGAAGCAGCGTCTGAAGGAGATCGAGGAGCAGGCCGCTGCACGATACCGACTCAAAGAGGCTGACGAGGACACTAACAGCGAAGCAAGCCAGAAGAAAATCGACGATGATGTCGAGAGTATACTCTCAGACAGCAGCTCCATGTACAACTTCTGCAAAAAGAACAAAGAAAATCTAACACCTCTGGAGAGGTGGAAGATTAAGCGAATTCAGTTCGGATGGAACAAAAAAGACGAGAACGGAGAGCAGACGGAGGCTGAGACGGAAACGCCCGCTCCCTCATTGGAGGACGTCAACTTAACGGCCTATCAGACCTGGAAACTGAAGCAGCAGAAGAAGCATGGCGGTGAAGAGAACAAGGACGAAATTCTGGAAATGAGTCGAGCAGAGGACACGGCCACGATCAAGAGAAGACAGCGAAGAGAGGAGCTTCTGGAGCGCACACGGAAAACACTCGAGGAGAGCCAGTCGGTGTGCGGCTGGGAGACCGAGAGCGCTCTGAGCGGCGGGAGCAGCATCCCGCTGTCTGCTTTCTGTGCAGGAGCCTTCCCGTCTGCAAGCGTTGCCGGAGACGATAACATGTCTGTGCTGAGCGGAAGGTCCTCTGTCCTATCAGGGCGAAGCACACGATCCCAGCCTCCTGTTCCCCAAGAGCCTCCTACACCACCCACTCCGGTCATCGGACCTAACGGCGAGCCCATGGTAAACCTTGCCAATATCCAAAACTGGATTGCCAACGTGGTCAATGAGACTCTCATGCAGAAGCAAACAGAGATGATGATGGGAGCGAGTCTCGCCCCTTCCAGAGCGGGATCAGTGTTTAGTCTGGGTGCTGGAGTCTCAGCACGTGGCGTAGACGATGATAAAGTCTCAGTGTTGAGTGGAGCCACGTCCTCAAGCGTACTGTCCCGAAGTAGAGCCGAGTCCGTCCGCTCTGTGCTGTCGGCTGGCGGTCGCGCCGAATCCGTGCTTTCTGCTGGAGGAGCATCCAACCTCTCCTCGGTGTCCGGTTTGGGCTCACGGAGAAGCAAGATTACTACAACCAGTGTGCCGCTGTACAGCCTCTTCCAAGACCAGGTGAACCTTCACAAACTGGACACCATGGAGAAGGAAATCAAGTCTGACATGCGGGACAAGATGGCGTCTTATGAGGTGAAGAAGATTGCAGAGGACAACAAGCGCAGCACGTTATACAAGAAGAAGAAAACAAAGGAGGAGGACGATGAGGATGAGGCCGGTCTTGGAAAGTCCAATGGATTTGAGGATTTGGCAGCCCGTTCCTCTGAGAAACCCAAACCCAAAAGAGATTACGGCCGTTCAGGAATACTGAACCTTCCGGCTTCAGCCAGTAACCCCACCAGCAGCATTGATGAATGGCTCAAAAATGTAAGACCTCCTCCGAACAAACCAAAACCGAATGATGGAGACGTCGAGCCTCTCCGCATGACTCGGCCATCCGGGATCGAGGAACCCTCGGAGTTCGACTTTCCGAGCCGCAGGAGCTCAATTTCAGTGGATGAAGAAGCAGAAGAGGAGGAATATAGCTTTGCCTCAAGATTTTCATCCAGGCATCTGGCTGATGCTGACATGGATTTGGATCGAGATCCCAGTCCAGAGTTTAACTATCGATCTCGGAGGTCCCCGCCTTCTGTTGAGCCGTCGTATAACGGCTTAAGTGAAGCTACTACTTACAGAACTAGGAGATCTTATGCAAGATATGAGGAGGAGGAGGAGAGGGGCAGTTATCAGAGCTACTCAACAAAGCAGAAATTACATGAGAACACTGAGACTGTGAGGACGGCTAAAACTGGACAGGAAGACGAGGAAGATGATGAAATCTCTGCTTTCATTGCTCAGATAAAGCAGAGGGCGAGAGCGCGGTTGGCCGAAGAAATGGAGGATGATGAAGTTCTTTCCGCATGGAGGAAACAGGAGGAGTCAAAATCACACGTTCACAAAAACTAATTGAAAAATAGTCTATGTAAGTGTTTAATATGTGTAAAATGACAATTCATAAAAGCAAAACTGTTCAGTATGAGACTCTAAAATGATGGACCTTCAGTCTATACTGTATATAAACAAACAACTGTGTTACAAGTACTAAATGACATCGTTGCATTCATTATAAAATGAAACTTTTTCAAAATTCTTGTGTTCAGGTTTTGATATGACAGAGAATAACCAGACACACCTTCCTAAAGTTAAGAGCAGATTATGTCATAAAAATAAAGGTTCTTTACTGGCATCAGTGGTTTTTATATGTGGTAAAAAGGCTTTATCTTATTAAAATGTTTTTCACTAATAAAAAAAAAAATTAAAATTAAAAACTGTTCACCAAAACTTTCTTTGGAGAACCAAAAATGGTTCTTCTGTGGCATCACTGCAAAAACCCCTTTATTTTTAAGTGTAGCCCCGCTCCAAGCGGGTCGTGAACCCGGGCCCGTCCGCATGGGAGTCGGACGCTCTAACAAGGAGGCTAAAGGATGCAACCTGTAGCGTCAGTCGCTAGAGCATCTCTTGAGATCAGAGGAGTGAGGTGTACACACACATAAGAGTGTACGATAAAGGTAATGTTGTGTGATAAACTTGGAGAAAGGAATAACAGATTTAGCAGGTCTGGGGACTCATATTGGGCCAATATCTGCAAATAATAATATTTACAGTGAAAATAATATATGGTTCATTAAACACACATTGAAGTTGTAACAATGGGAACCTGCAGCACTCGATAGGCAGTAAAACAATATGAAGCACAAATCATTTCATGAAACATCAAATAAA

Function

symbol description
dusp27 Predicted to enable protein tyrosine/serine/threonine phosphatase activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be located in sarcomere. Is expressed in optic tectum and somite. Orthologous to human STYXL2 (serine/threonine/tyrosine interacting like 2).

NR:

description
LOC792623 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06352251_06359190.mRNA True 5258 mRNA 0.47 6 6351435 6360203

Neighbor

gene id symbol gene type direction distance location
CI01000299_06337727_06341840 NA coding downstream 9595 6337139 ~ 6341840 (-)
CI01000299_06320613_06321046 NA coding downstream 30389 6320564 ~ 6321046 (-)
CI01000299_06310939_06311125 NA coding downstream 40206 6310939 ~ 6311229 (-)
CI01000299_06306931_06307410 NA coding downstream 44025 6306100 ~ 6307410 (-)
CI01000299_06299968_06305021 NA coding downstream 46277 6298896 ~ 6305158 (-)
CI01000299_06362136_06376918 NA coding upstream 1801 6362004 ~ 6377235 (-)
CI01000299_06476844_06477950 PRS23, PRSS23 coding upstream 115780 6475983 ~ 6479549 (-)
CI01000299_06497414_06502931 CK073, HIKESHI coding upstream 136953 6497156 ~ 6502931 (-)
CI01000299_06505676_06510021 EED, EED.S, EED.L coding upstream 145354 6505557 ~ 6510144 (-)
CI01000299_06516832_06521405 NA coding upstream 156392 6516595 ~ 6521405 (-)
G407939 NA non-coding downstream 119160 6226412 ~ 6232275 (-)
G407923 NA non-coding downstream 129056 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 167900 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 205511 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 236945 6108478 ~ 6114490 (-)
G407986 NA non-coding upstream 29173 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 31841 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 56923 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 79318 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 80044 6440247 ~ 6440470 (-)
G407805 NA other downstream 515446 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 895327 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1422617 4913373 ~ 4927715 (-)
G407413 NA other downstream 1800714 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 171798 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038759 dusp27 coding NW_018394426.1 KZ116034.1 1250 ~ 8270 (+)