CI01000299_06430810_06434834


Basic Information

Item Value
gene id CI01000299_06430810_06434834
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6428051 ~ 6435178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06430810_06434834.mRNA
CCATATAAAGCCCTCCTCACCAATGAAACCTCAGCAGAACCTCATCCTCTAAACACACTCGCTCTTCAACTTGTCCATCAAACTCAATTCCCAACTGACCACAGCTACAACCCCAAAACTATTATTAAAGAAATTGACAAAAATCTAAAAGATACTCATGATGAATCACTAAAAGCACATTTTTGATCTCCAAAATAAACTCCAATGTTACTCGACCTTTACAGTTTTTTTACAGACGCTAGGACACATTTCTCAATACTTAGGTCACTTTTGCAAAACTCACACAGTGAGCACAACAGAAGTCTATGTGGGCTAAACTGAGGATCAATTATCATTGCTTTGGAACAAAATGCATTCAATGACTACATCTCTCAAATTTCATGAATTCTTTTCTCACTCAGACACAACAACTGCCAAAACTCTTTGTACGTACAGGCCAATTTGCACATGCTTACATACTGTTTTCAAAACTGTTAAACTTAAGTTAAAAACAGTAACATAATACAAAACTGAATAAGACAGAAATTTGCTACATTTCTACAGTAATATAGTTATGAAATATATTCTGAATCTAAAAAATCAAATACTATCAAAACAATTAGATGAAACTGAACACCTACACAAGCATTAGTCTTTCAATTTCATTACCATCAATTCAAAAGGGGAAACTTAGGAATAATTTTGTTCTGTAATGTAAACATGGAGCATGTAACATAAACTGCAGTGAATTATAAGCAGTAGAGAGTGTCATTCTTGTTTTGTAAAGACATTTTAAAAAAGAAAACATTGTATAATGCTAACTGATGTTAGTGTTTTTAGGTCGATGTTTTATGAGTGACAAAGTGTGTTTGCTCAGTGAAAACCTTTGCTAGTGTTCTGGAAGAATGAGTTGATTTGAGACATGAATGAAGTGTTTTGGTAGATTTGGTGCATTTTGAATGTGAAGTTAACCTCTGTGCCAAGATGAAAGTTGGTTAGGAGAACTGTGTGAAGAGTTTTGAAAAAGTGACCTAAGTATTGAGAAATGTGTCCTAGCGATTGTAAAAAACTGTAATAGAACCACTAAATTGGCAAATTATCTATTAATGAAACAATTTAAAGAAAGACAAATCCACTCCAAATACAGATTAAGTGACCATGATCTAGAAACAGAGAGAGGAAGACATAGACAAACATGGACAGAGAGAGAGCGGAGGATCTGTAGACACTGTGATCTACAGCAATATGAGAAACACTTTCTACTCATCTGTCCTAAATATCAGGATGTGAGAGAAACATTTCTCTCCAGATTTGAAACACTGATTCCATCATTCATTGAACTGAGTGATACTGAGAAAATGCCCTTCATACTTGGTGAAGATGAGAGCAGCGCTACACTAGCTGCACAATGTGTTAGCCATTCACAACATCAGAGACGGATAACTCTCTAGAGACCTGCTTCATTTATTCATTTACTCAGATGGATTTATTTACTATGCTACATATGACATGATGTATACATATATGTTTTGTTTGTTTGTTTATTTTATTATTTATATATAATCTGCTAATGCTTTGGCAACATTGTGATTCACAGTCATGCTAATAAAGCTCAACTGAATTTGAATTTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGACAGAGAGTAAGATAGAGAGAGAGTGTGTGTGTGTGGGGGGGTGACAGAGAGTAAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGACAGAGAGTAAGAGAGAGAGAGAGTGTGTGTGTGGGGGGGTGACATAGAGTAAGAGAGAGAGAGAGTGTGTGTATGTATGTGTGGGTGGGTGACAGAGAGTAAGAGAGAGAGAGAGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTGCCACTCCCTCATCATATTCCTCTTGTCAAACCAGTTTCTCTGGATCTCATGCAGATCAGTGTGTTTTTCAGTCTGATTATTAAATGGTTAGAAATGAGTTTCCAAGAGTTCACAAACAACATCTGACATTGATTCCTCTCAACAAAAGTCTTCGCTTTATTGATTTGTATTAATTTGGACTAGTTTTCTTCCTCATAAGCACATCACACTGTCACAGCACTGTGGTCTGTGTGGCTTTTCTAACATGAAACTGTGAGACATATAAGAGCACCAGGGCAAGATGAGACTCGACGGCTGGGCGGGACTTTACTGTTCGACTTCCTGAACCAGTTTCAGTGTCTTCTACACCTTCAGTTCCTTTCATACCTGTAACACTGACACCAAGAGATGGCAGCAATACTGGGAATATTTGGGATTTGTCTGCTGTTCAGCGGAGTGCAGGTGTCGTCTTCGGCCTTGACTGTAGATATCCCACAGAAAGATTATAAGATTGCCAGGGGTGATGATGCGACGATACCCTGCAAGTTTTTACCCCAAGGTGCGAGTGCACAAGTCCAAGTAACATGGACAGCAGCTCCAGCTGTGCCGGGAGAGCCAACGATGACCATCGTCACTTACTTCGGTCCCACTTCAATTAAAGTGACGACGAAATATAAAGGCAGGGTCAACCTATTACACGATATCCCAAATGGAAAAGCCGACCTGCAGCTCCTGAAAGTCACTAGCAAAGACACACGCAGTTATGAGTGCAAAGTCGAGGTTATGAATAATGAAGAGGACGGTGTGTCTGACACGGCCAATCTCATAGTCTTGGTGGCTCCATCGCCGCCCATCTGCAAGATTGAAGGGGTGTCAGAATACTATCAGAACATCAACCTGACCTGTCGCTCGGAGGAGGGAACGCCCACACCAACCTACAAGTGGCAAAGATACGACACCACGAACATCGCTCGGCCGAACCCGCCCAAGACCACTGACATAAATGGAGTGCTGTCACTCTACAATATTACCGTAGAAACGTCCGGTTTCTTCATCTGCACGTCCACCAATGAGATCAAATCTGCAACGTGTAATCTGACCCTGGCCGTCATGCCACCGTCCATGAGCATGGCCTCCATTGGAGGGATCATTGGGGCCATTGTGGCCGTGGCTCTTATCTTTGGAATCATCATCATCTGCTGCTATTGCTGTCGGAAGAAGGAAAAGGCTGAGGAATACAGGATGGGGACTCCTGAAGGAGGAGAATTCACAGACAAGGATCCTGAAGGGAAAGGGGACGGTCAGGATGAACACGTCAGCTACGAGGAAGAGCGTCGTGTGAAAAGCGCAGACAGACGTGATCCGCAAGACGACCGCAGCGAGAGGAGCTACGATCGGCGCAGCGACTACACCGACAGACGAGACGATCACAGTGACCGCCGGGAGAGGTACGATCGAGATGACCGCTACGATGACCGCCGCGACCGCTACGATGACCGCCACGACCGCTACGATGACCGCAAAGACCGCTACAGTGATCGCAACGACCGCTACGATGACCGCAGAGACCGTTACGATGACCGGAGGGATCGTGACGATGACAGTGACCATTACTCCGAGCGCTACGACAGCCGCGACAGACCTCCCAGCGTTCCGCCCAATAAACCCAAAGACCCGAGACACTGAGTTCAGACACCGATCCGTCCCTCAGCTACGGAAGCCCAATCATCAGAAAAAGAATCATAATCATAATCATATAAAAGGTCAAAAACATTACACACCAAGTCATAATTATGACATAAAAAGTTGAAAATATGACAGTTATATTAATGAGATGAAAAGCTGGAATAGACACAGTTATAATTTTAGATAAAAAGTCAAAATATGACATACTAAGCCATAAATTTGATCTCATAATTATGACTTATTATATCAAAATTTTGACTTTTTATGTCATGATTAAGATTTACCAAAGCATAACAACAACAAAAGTTTTTCATCCTCATTTGCTGAATATGAGATTTGACAGA

Function

NR:

description
Sc:d0144 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06430810_06434834.mRNA True 4381 mRNA 0.39 7 6428051 6435178

Neighbor

gene id symbol gene type direction distance location
CI01000299_06424909_06425694 NA coding upstream 2318 6424811 ~ 6425733 (+)
CI01000299_06416707_06422267 NA coding upstream 5403 6416707 ~ 6422648 (+)
CI01000299_06396938_06400105 NA coding upstream 26709 6396938 ~ 6401342 (+)
CI01000299_06322253_06326504 CREG1 coding upstream 101489 6322253 ~ 6326562 (+)
CI01000299_06312445_06318421 NA coding upstream 109630 6312040 ~ 6318421 (+)
CI01000299_06439603_06455258 ILDR2 coding downstream 4425 6439603 ~ 6455462 (+)
CI01000299_06458969_06464458 NA coding downstream 22897 6458075 ~ 6464695 (+)
CI01000299_06466541_06475063 TMEM39A coding downstream 31363 6466541 ~ 6475639 (+)
CI01000299_06532144_06534604 RPL24 coding downstream 96966 6532144 ~ 6534631 (+)
CI01000299_06541306_06541820 NA coding downstream 106128 6541262 ~ 6541985 (+)
G406494 NA non-coding upstream 35695 6392080 ~ 6392356 (+)
G406480 NA non-coding upstream 104428 6323185 ~ 6323623 (+)
G406172 NA non-coding upstream 116352 6310408 ~ 6311699 (+)
G406142 NA non-coding upstream 141625 6279419 ~ 6286426 (+)
G406196 NA non-coding upstream 161821 6265754 ~ 6266230 (+)
G406161 NA other upstream 127543 6237838 ~ 6300508 (+)
G406244 NA other upstream 1054472 5371181 ~ 5373579 (+)
G406096 NA other upstream 1500207 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1723426 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1922134 4480553 ~ 4493116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G545363 NA non-coding NC_048570.1 CM023224.2 74992612 ~ 74993103 (+)