CI01000299_06466541_06475063 (TMEM39A)


Basic Information

Item Value
gene id CI01000299_06466541_06475063
gene name TMEM39A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6466541 ~ 6475639 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06466541_06475063.mRNA
ATGCCCGGGGGCCGCAGGGGTCCCAGTAGACAGCAGCTGAGCCGCTGCGCTCTGCCCTCGCTGCAGACTCTGGTGGGCGGCGGCCTCAGCAATGGGGCGGGGCTCAGGTGCAGTAACCTGCTGTTTGAGTCACTGCTCTTCCTCTACCTGCTGGTGGCGCTCTTCGTTCAGTACATCAACATTTACAGGACGGTGTGGTGGTCTTCATACAACCAGCCAACAGCCTCCACCTCAATGAACTACCATCTGATGGACTATCACCTGGCTGTCTTCATCACCGTGATGTTGGCCAGAAGACTGGTGTGGACCATCATCTCAGAGGCGTCTCAGGCGTGTCCGTCGTCTCTGCTGCGGTACGTGGCTCTGATTGTGGCCCGTTTGATCCTGCTGACGCTGTGCGGCTGGATCCTGTGCTGGACGCTCGTCAACCTCTTCCAGCGATACTCCGTACTCAACCTGCTGTTCCTGGGTTATCCGTTCGGAGTTTATGTGCCGCTGTGCTGCTTCCATCAGGAGGGTCGAGCCCAATCCGTCCCACCCGACTGCAGCTTCTCCGAGCAGGACGGGTCCGACGGGCCTCTGCCGCGGCCCAAAGACTTCCTCACGCTACTGCGTGAAAACCTGCGTGAGCAGTTCTCTAGCCCCGCCCACAGCCCCGCCCACACCTGCCCGCCGTCCCCGGAGCTGATCCGCAGCGAAGTCCAGGAGCTCAAGACCGACTTCAACCGGCGCATTAAAGAAGTGCTCTTCAACTCGCTCTTCAGTGCTTATTACGTGGCCTTCTTGCCGCTGTGGTTCGTCAAGAGTACGCAGTACTACGACATGCGCTGGTCGTGTGAGCATCTGATCATGGTGTGGATCAACGCGTTCGTGATGCTGATGAGTCAGCTGCTGCCGCCCAGTTACTGCGACCTGCTGCACCGCTCCGCCGCACATCTGGGCCGCTGGCAGCGTCTGGAGCACGGCTCCTACAGCAACGCCCCGCAGCACATCTGGTCTGACAGCACCATCTGGCCGCAGGGAGTTCTGGTTCGACACAGCCGCTGCCTCTATAAGGCCGTCGGGCCGTATAACGTGGCCTTGCCCTCTGACGTCTCGCACGCCAGGTTTTATTTTCTGTTCCATAAGCCACTGCGGATCCTGAACCTGCTCATCGGGATCGAGTCGAGCGTGGTCCTGTATCAGCTGTACTCGCTGCTGCGCTCCGAGCGCTGGAACCACACGCTGTCGCTCGGCCTCATCCTCTTCTGCAACTATTACGTGCTGTTCAAGCTGCTGCGGGACCGGATCGTGCTGGGCAAGGCGTACTCGTACCCGCCGGGCGCCAGCCTGGCCGTGAAGACGCAGTGATGAGACTGAACTCCTCTTGCTTTTGATACCGTCTATTTTCATGCAACCTTTGTATCTATTTAATAAGATATTTTATTTTGTATACTGTTACACACAACCAGAACACAGGGCATTACGTTTACGGCACAATGTCGTATCCTCTCTCCCCACGAGCTGCGCAGGAGGGAGATGTCTATGTTTTGTAGCCCGCGTCTCACATGACGTCCAAATTCAGCCAAAGATTGAAAACTAAAAAAACTGGAAGAGCTAATGCTGGCCAATCACAAGGAAGGACTGGACGGGGCGGCCCGGTTCACTGAGTGCTGACGATCATTTCCACTGTTAAGTATTACCTGTTGTGTGTCCATTTTGTTTCAGTCAATCTTTGTAGATAAACAGCACCGACAGGACTGATTTTAAAGCTTGAGCAATCAGCATCCTCATTTCCTTCTCATGTTAACTCTGTGCCAAATCCCAGGGGGCCGCGGGCCATTCGCAGTGGGTGTGGCCACGTGAGCTCTGGGCGGAGCCCTAGACTGTCAAGCTTGCAGTATTTTACAAAACCGCTTTTGTTTCAAAGTGCCGATGACATCCAGA

Function

symbol description
tmem39a Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06466541_06475063.mRNA True 1926 mRNA 0.56 8 6466541 6475639

Neighbor

gene id symbol gene type direction distance location
CI01000299_06458969_06464458 NA coding upstream 1846 6458075 ~ 6464695 (+)
CI01000299_06439603_06455258 ILDR2 coding upstream 11079 6439603 ~ 6455462 (+)
CI01000299_06430810_06434834 NA coding upstream 31363 6428051 ~ 6435178 (+)
CI01000299_06424909_06425694 NA coding upstream 40808 6424811 ~ 6425733 (+)
CI01000299_06416707_06422267 NA coding upstream 43893 6416707 ~ 6422648 (+)
CI01000299_06532144_06534604 RPL24 coding downstream 56505 6532144 ~ 6534631 (+)
CI01000299_06541306_06541820 NA coding downstream 65667 6541262 ~ 6541985 (+)
CI01000299_06556313_06564020 NA coding downstream 80674 6556313 ~ 6564237 (+)
G406494 NA non-coding upstream 74185 6392080 ~ 6392356 (+)
G406480 NA non-coding upstream 142918 6323185 ~ 6323623 (+)
G406172 NA non-coding upstream 154842 6310408 ~ 6311699 (+)
G406142 NA non-coding upstream 180115 6279419 ~ 6286426 (+)
G406196 NA non-coding upstream 200311 6265754 ~ 6266230 (+)
G406161 NA other upstream 166033 6237838 ~ 6300508 (+)
G406244 NA other upstream 1092962 5371181 ~ 5373579 (+)
G406096 NA other upstream 1538697 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1761916 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1960624 4480553 ~ 4493116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location