CI01000299_06505676_06510021 (EED, EED.S, EED.L)


Basic Information

Item Value
gene id CI01000299_06505676_06510021
gene name EED, EED.S, EED.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6505557 ~ 6510144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06505676_06510021.mRNA
ACTATGAATTATTATCGCACTTATAAGCCATTAAAAGGTTTGCATCAAACTTTGCTGTTAAGCTCTATTTCTCTGCTGAGTGATCTAGTTCTGAACATCTGCAGGTCTGACTGAGCTCGAGCGATGAGTGTGAAATGTCTCCCTCTGCCGTCGCTCAGTGTTACTGCAGCTGTCGTGCTGTTTTGCGGCGGTGTGGCACGAGCGCGCGCGCTTCGCTTTCCGGCAGTGTGGCATTGCTGGAGGAAGATGAGGAGGAAGATGTCTGAATCTCATGCCGAGGCGGGAAACGAGATGCCGCATAACAAAAAACAGAAATTAAGCAGCGATGAAAACAGCAACCCCGATCTGTCTGGAGACGATAATGATGACGCCGTCAGCGTTGAAAGCGGCACCAACCTGGAGCGGCCGGACACACCGACCAACACGGCCAATGCCCCGGGCAGGAAGAGCTGGGGCAAAGGCAAGTGGAAGTCCAAGAAATGCAAATATTCCTTCAAGTGTGTCAACAGTCTGAGGGAGGATCATGGGCAGCCGCTGTTCGGAGTGCAGTTCAACTGGCACAGTAAAGAAGGAGATCCGCTGGTGTTCGCGACGGTCGGCAGCAACCGGGTGACTTTATACGAGTGTCATTCTCAGGGAGAGATTCGTCTGCTGCAGTCGTATGTCGATGCTGATGTATCCTTTCATAAACGCTTGTCTTCGGCAGATGAAAACTTCTACACCTGCGCTTGGACCTTCGACACGAGCACCAGTCACCCGCTGCTGGCCGTGGCCGGGTCACGTGGCATCATCCGCATCATCAACCACATCACCATGCAGTGCGTCAAACATTATGTCGGCCATGGTAACGCAATCAACGAACTCAAATTTCACCCGAGGGATCCGAACCTCCTGCTGTCAGTCAGTAAAGATCACGCGCTGCGCCTCTGGAACATCCAGACAGACACTCTGGTGGCCATCTTTGGAGGCGTGGAGGGCCATCGCGACGAGGTCTTGAGCGCGGATTTTGACCTGCTTGGTGAGAAGATCATGTCGTGTGGGATGGATCACTCGTTGAAACTGTGGAGGATCGACTCTGAGCGGATGCAGAAAGCCATTCGCGGCTCATACGAGTACAACCCCAGCAAAACCAACCGGCCTTTTGTGTCTCAGAAGATTCACTTCCCAGACTTCTCCACGCGGGACATCCACAGGAACTACGTGGACTGCGTCCGCTGGCTCGGCGACTTGATCCTCTCTAAGTCATGTGAGAACGCAATTGTGTGTTGGAAACCTGGGAAAATGGAAGACGATATTGACCAAATCAAACCGAACGAGTCTAATGTGACGATTCTTGGCCGCTTTGATTACAGTCAGTGTGACATTTGGTACATGCGCTTCTCTATGGACTTCTGGCAGAAGATGCTCGCTCTGGGAAATCAAGTCGGGAAGCTGTACGTTTGGGACCTGGAAGTGGAAGATCCTCATAAAGCAAAGTGTACGACGCTAACCCTCCCTAAATGCACGTCGGCCATCAGACAGACGAGCTTCAGTCGTGACAGCAGTATTCTGATCGCCGTGTGTGACGATGCCTCCATCTGGCGCTGGGACCGTCTGCGCTGATCCGCTGATGATTGATGAATGATTGATCATCAGGTTCTGTCACTGCTTTTGTTTTTATCTTGACTTTGCTTTCATCTTTTGCTTTTCTCTTTGCCGTTTTCTTGTCTGACTTTAATAAA

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

GO:

id name namespace
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K11462 EED; polycomb protein EED

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06505676_06510021.mRNA True 1721 mRNA 0.51 12 6505557 6510144

Neighbor

gene id symbol gene type direction distance location
CI01000299_06497414_06502931 CK073, HIKESHI coding downstream 2626 6497156 ~ 6502931 (-)
CI01000299_06476844_06477950 PRS23, PRSS23 coding downstream 26008 6475983 ~ 6479549 (-)
CI01000299_06362136_06376918 NA coding downstream 128322 6362004 ~ 6377235 (-)
CI01000299_06352251_06359190 DUSP27 coding downstream 145354 6351435 ~ 6360203 (-)
CI01000299_06337727_06341840 NA coding downstream 163717 6337139 ~ 6341840 (-)
CI01000299_06516832_06521405 NA coding upstream 6451 6516595 ~ 6521405 (-)
CI01000299_06522084_06525262 NA coding upstream 11824 6521968 ~ 6525262 (-)
CI01000299_06526127_06532048 CEP97 coding upstream 15983 6526127 ~ 6532048 (-)
G408023 NA non-coding downstream 13539 6491757 ~ 6492018 (-)
G408022 NA non-coding downstream 14045 6491187 ~ 6491512 (-)
G408021 NA non-coding downstream 15853 6489437 ~ 6489704 (-)
G407924 NA non-coding downstream 40372 6462457 ~ 6465185 (-)
G407937 NA non-coding downstream 46437 6458779 ~ 6459120 (-)
G408028 NA non-coding upstream 31141 6541285 ~ 6546201 (-)
G407805 NA other downstream 669568 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 1049449 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1576739 4913373 ~ 4927715 (-)
G407413 NA other downstream 1954836 4475994 ~ 4550721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location