Gene
RNA
| Item | Value |
|---|---|
| gene id | G403738 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 240213 ~ 240461 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU464099 | True | 249 | lncRNA | 0.54 | 1 | 240213 | 240461 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_00185106_00209299 | NA | coding | downstream | 30914 | 184774 ~ 209299 (-) |
| CI01000299_00169255_00170695 | NA | coding | downstream | 69227 | 169223 ~ 170986 (-) |
| CI01000299_00448948_00449565 | NA | coding | upstream | 208402 | 448863 ~ 449757 (-) |
| CI01000299_00452374_00452868 | NA | coding | upstream | 210880 | 451341 ~ 452868 (-) |
| CI01000299_00670925_00672195 | NA | coding | upstream | 430219 | 670680 ~ 673625 (-) |
| CI01000299_01003547_01034507 | NA | coding | upstream | 762858 | 1003319 ~ 1034812 (-) |
| CI01000299_01057889_01063623 | NA | coding | upstream | 817359 | 1057820 ~ 1063623 (-) |
| G403772 | NA | non-coding | downstream | 458 | 239537 ~ 239755 (-) |
| G403737 | NA | non-coding | downstream | 5951 | 234040 ~ 234262 (-) |
| G403707 | NA | non-coding | downstream | 77297 | 60302 ~ 162916 (-) |
| G403773 | NA | non-coding | upstream | 689 | 241150 ~ 242770 (-) |
| G403774 | NA | non-coding | upstream | 2365 | 242826 ~ 243621 (-) |
| G403775 | NA | non-coding | upstream | 3251 | 243712 ~ 244005 (-) |
| G403776 | NA | non-coding | upstream | 4129 | 244590 ~ 245004 (-) |
| G403777 | NA | non-coding | upstream | 5036 | 245497 ~ 245771 (-) |
| G404372 | NA | other | upstream | 830146 | 1070607 ~ 1075891 (-) |
| G404784 | NA | other | upstream | 1419194 | 1659655 ~ 1660000 (-) |
| G404976 | NA | other | upstream | 1615178 | 1855639 ~ 1880988 (-) |
| G405053 | NA | other | upstream | 1777226 | 2017687 ~ 2018050 (-) |
