Gene
RNA
| Item | Value |
|---|---|
| gene id | G404168 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 596568 ~ 601001 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU464578 | True | 271 | lncRNA | 0.52 | 2 | 596568 | 601001 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_00452374_00452868 | NA | coding | downstream | 143700 | 451341 ~ 452868 (-) |
| CI01000299_00448948_00449565 | NA | coding | downstream | 146811 | 448863 ~ 449757 (-) |
| CI01000299_00185106_00209299 | NA | coding | downstream | 387269 | 184774 ~ 209299 (-) |
| CI01000299_00169255_00170695 | NA | coding | downstream | 425582 | 169223 ~ 170986 (-) |
| CI01000299_00670925_00672195 | NA | coding | upstream | 69679 | 670680 ~ 673625 (-) |
| CI01000299_01003547_01034507 | NA | coding | upstream | 402318 | 1003319 ~ 1034812 (-) |
| CI01000299_01057889_01063623 | NA | coding | upstream | 456819 | 1057820 ~ 1063623 (-) |
| CI01000299_01114487_01122666 | NA | coding | upstream | 512749 | 1113750 ~ 1124230 (-) |
| CI01000299_01222994_01268707 | NA | coding | upstream | 621858 | 1222859 ~ 1270326 (-) |
| G404166 | NA | non-coding | downstream | 10221 | 586146 ~ 586347 (-) |
| G404162 | NA | non-coding | downstream | 40505 | 555853 ~ 556063 (-) |
| G404161 | NA | non-coding | downstream | 40917 | 555444 ~ 555651 (-) |
| G403913 | NA | non-coding | downstream | 70714 | 525521 ~ 525854 (-) |
| G403875 | NA | non-coding | downstream | 117418 | 478544 ~ 479150 (-) |
| G404169 | NA | non-coding | upstream | 4072 | 605073 ~ 605582 (-) |
| G404293 | NA | non-coding | upstream | 524735 | 1125736 ~ 1127433 (-) |
| G404380 | NA | non-coding | upstream | 530042 | 1131043 ~ 1131262 (-) |
| G404457 | NA | non-coding | upstream | 546455 | 1147456 ~ 1147727 (-) |
| G404372 | NA | other | upstream | 469606 | 1070607 ~ 1075891 (-) |
| G404784 | NA | other | upstream | 1058654 | 1659655 ~ 1660000 (-) |
| G404976 | NA | other | upstream | 1254638 | 1855639 ~ 1880988 (-) |
| G405053 | NA | other | upstream | 1416686 | 2017687 ~ 2018050 (-) |
