G403972


Basic Information

Item Value
gene id G403972
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 604870 ~ 606350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU464370
AAACACTTAAATAGGTCTAAATAAGCTTTTCTGATGGGTTTCTAGTAGAGCATGAAGTCATGGGTTCAAGGTTCCAAGGAATTGCCTGTGAAATCCAGAGAAGTGGCTTTAGTTCGCTTTTTTCAGAAATGTTAAAAGTCTTGATCTGTAGAAACAATATCAAATTAAAGCTGCAAGCAGCGATGAAAGGGCCCTCGCGCCCGGGCTCACCGCCAACCGTTGGCCTTAGGAAAACAGTGAACAGTGGGCGACATGCATGTAAGCGAGTAAATACAGGAGAATTATGGCCAAGTCATTTCAAAGTGCCAGACTTCCTGCTGCCAACAGGTGGCGCTTTGACCGTAACTGAATATTGCCATGTAGATGACTTCAGGCCAGGACTATTATCGAACTGGGACTATTATTTCGTGGCGTTAATCGCATACATTAGCACTTAGCCAAGTGTTGCATGATTTAACCTGTTTCTACTGTGTTTGGTACTTTGTGGCATATTGAAATGTGTTTCTGGGAGTGAATTACAGTGTAAAGCATGCCATTTTCTGTTGCCAGCAGGTGGCGCTATGACTAACTGAATATTGGCATATAGATGTCTTTAGGCCAGGACTCTTATCACACATGTGAAGTTTGGGGCAGATCGGACATTGTATGCCTGAGTTACAACAGCTTCCTCTTTCATGGCGAAACATCAGAATTTGTCAGGCCGCCACGGACACACCCTTTAGTGAAAACTCAAGATCTTTACAATTTAACATAGCTAAGGCCTTTAGATTAGACTGACCAAATATGATGTGGTTCTGGTTAAATCTGTATGAGGAGTTAATCACAGTGTAAAACATGTCATTTCCTGTTGCCCGCAGGTGGCGCTATGACCGTAACTGAATATTGCCATGTAGATGTCCTCAGGCCAGGACTCTTATCAAACATGTGATGTTTGGGGCTGATCCAACTTTGTATACCCGAGTTACATAAACTTCCTTTTTCATGGCAAAACATCGGAATTTGTCAGGCCGTCACGGACACGCCCTTTAGTGAAAACTCTAGATCTTCGCAATTTAACGTTGCAGAGGCATTAGACTGACCAAATATGATGTTGATCTGATAAAAGCTCTAGGAGGAGTTCGTTAAAGTACAACATCTGGAGATGGCAAAAAGTGCACAAATTTTGCAGAGAAAATTAAAAATATCTGACTTCCTGTTGGTTTTCAGACTTTGCTCCAGCAGACTTTTTTGTAGGGATTGGGCTGTTACATGTGTCTACTGAATTTCATACCTGTACGTGAAACGTGGTGCAAGGGGCACTTCGTTGAAATTTTGTAGGTGGCGCTATCGAGCCATTTTGCCACGCCTAATTCTGAGACCCATAACAGACGTAAATTTTCACCACTTCTGACGCGTGTGCAAAGTTTAATGAGTTTTCGAGCATGTTTAGGCCCTCAAAAATGCGATTCATTTGGGAGAACAAGAAGAGGAAGAAGCGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU464370 True 1481 TUCP 0.43 1 604870 606350

Neighbor

gene id symbol gene type direction distance location
CI01000299_00419297_00444862 NA coding upstream 158982 419297 ~ 445888 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding upstream 242784 345042 ~ 362086 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding upstream 274707 315123 ~ 330163 (+)
CI01000299_00255175_00294177 MBNL2 coding upstream 310693 255175 ~ 294177 (+)
CI01000299_00151569_00153623 SLC5A3A coding upstream 450398 151519 ~ 154472 (+)
CI01000299_00689032_00727635 NA coding downstream 82556 688906 ~ 727836 (+)
CI01000299_00795673_00796901 GPC6 coding downstream 189323 795673 ~ 797157 (+)
CI01000299_00826470_00828773 NA coding downstream 220083 826433 ~ 828960 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding downstream 256453 862803 ~ 911972 (+)
CI01000299_01036243_01046776 NA coding downstream 428687 1035037 ~ 1047603 (+)
G403971 NA non-coding upstream 1287 602832 ~ 603583 (+)
G403965 NA non-coding upstream 21747 582756 ~ 583123 (+)
G403952 NA non-coding upstream 54128 550501 ~ 550742 (+)
G403595 NA non-coding upstream 442075 60419 ~ 162795 (+)
G404016 NA non-coding downstream 43065 649415 ~ 649814 (+)
G404137 NA non-coding downstream 464258 1070608 ~ 1075893 (+)
G404074 NA non-coding downstream 517229 1123579 ~ 1125274 (+)
G404075 NA non-coding downstream 519390 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 535006 1141356 ~ 1141636 (+)
G403609 NA other upstream 194082 364139 ~ 410788 (+)
G403578 NA other upstream 532599 35462 ~ 72271 (+)
G405609 NA other downstream 2548247 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3524908 4131060 ~ 4133941 (+)
G405842 NA other downstream 3689183 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3883468 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 4096032 4703071 ~ 4704780 (+)

Expression


Co-expression Network