G404484


Basic Information

Item Value
gene id G404484
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1197441 ~ 1198241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU464916
GTGCATATGTCACCGGTTTTGTTCACCTTCTTTATCTCTTCCGCTCACATCCCCCTTTTTCCAGAAGTCCAGGCTAGGGACACACAGACACCTTTGTGTGATTATTTTGCCACGATGGCAAGCCGAAGGACTGTCTGCATCCAAGGTCTCTCCTCCAATCCTTTTTCCTCCCTGCCAGCCAGCGAGACCACGGACTGGAAATAGCATTGATGGATTACTAATACGCCTGCTTGGGATGCAATGGAGCAGAGTGAATTTGAGCGTGTGCGTGTGTGTGCGAGGAAAACAAAGAAGTGGGAAGAGCAGGAAACCTTCTTGAAGGGGAAAACTGTCCTGTTCGGAAGCAAGCCTACACTTATATCAATCAACCCTCTATCAGAGGAAGACATTATCTGTTAGGTTTGGCCGTGCGAGAGGACACAGGAAACGGTCGATAACAGTAATGAAGGCTCATGAATTATTCACGCTGCGTTGGAAATTCACCCCTGGAAACCATTCTATAAAGAAACATCCGCCGTTTTCCCCTCTTTAGGGATGCCTCACGATTCTGCAAAATTTTACCTGTGATTGAAGCGGCATCATTAGGATTCTGCACATGTTGAATGTGCACATTTGTTTGCACGAGAACACGCGTGTGAACTTGAAGAGCCATTTCATCAACGCGAGAAGGAGGCCGTTTCACAAATGAGCCTTTCATCTCCAGTGCAGGGTAATTAACTGCTATTTAATGGACGGTGCCCACGCGCTCACTGCATTATCGACTGTGCGTGCTCGCTCGCTATCTACACGTTTATCAAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU464916 True 801 lncRNA 0.47 1 1197441 1198241

Neighbor

gene id symbol gene type direction distance location
CI01000299_01114487_01122666 NA coding downstream 73211 1113750 ~ 1124230 (-)
CI01000299_01057889_01063623 NA coding downstream 133818 1057820 ~ 1063623 (-)
CI01000299_01003547_01034507 NA coding downstream 162629 1003319 ~ 1034812 (-)
CI01000299_00670925_00672195 NA coding downstream 523816 670680 ~ 673625 (-)
CI01000299_00452374_00452868 NA coding downstream 744573 451341 ~ 452868 (-)
CI01000299_01222994_01268707 NA coding upstream 24618 1222859 ~ 1270326 (-)
CI01000299_01338052_01368900 NA coding upstream 139631 1337872 ~ 1369376 (-)
CI01000299_01419938_01421048 NA coding upstream 221288 1419529 ~ 1421048 (-)
CI01000299_01693958_01696561 SLITRK5 coding upstream 494683 1692924 ~ 1697305 (-)
CI01000299_02670695_02682116 NA coding upstream 1472355 2670596 ~ 2682116 (-)
G404457 NA non-coding downstream 49714 1147456 ~ 1147727 (-)
G404380 NA non-coding downstream 66179 1131043 ~ 1131262 (-)
G404293 NA non-coding downstream 70008 1125736 ~ 1127433 (-)
G404169 NA non-coding downstream 591859 605073 ~ 605582 (-)
G404486 NA non-coding upstream 1116 1199357 ~ 1200671 (-)
G404493 NA non-coding upstream 13466 1211707 ~ 1211930 (-)
G404541 NA non-coding upstream 111313 1309554 ~ 1309772 (-)
G404604 NA non-coding upstream 205673 1403914 ~ 1404355 (-)
G404669 NA non-coding upstream 268600 1466841 ~ 1500623 (-)
G404372 NA other downstream 121550 1070607 ~ 1075891 (-)
G404784 NA other upstream 461414 1659655 ~ 1660000 (-)
G404976 NA other upstream 657398 1855639 ~ 1880988 (-)
G405053 NA other upstream 819446 2017687 ~ 2018050 (-)
G407413 NA other upstream 3277753 4475994 ~ 4550721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G727 NA unknown NC_056699.1 CM032068.1 3334658 ~ 3340876 (+)