G404544


Basic Information

Item Value
gene id G404544
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1316276 ~ 1316603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU464976
CTTTAATAAGGATTAATTAATAATGGTGTTTAATTTGTACAGTGAAGACTATGCAATGTTATTTTACATTTGCTTAATTTATTAAATTTCTGTACCTGAAAACTACTGCCAGACCTACCTGAAAAACCTGAAAAGCAGTTTATTTTATTTGTATCTTTGTTATATTGTATTTATTTGTGCTTTTGCTTGTAATTTGATTGTTTGTTCTTATTTTATTACTGACTGTTTACTTGTCTTTAATAATGTTTTAAATTTATATTAGTTAGGCTAGTAGTTTTAGCTGTGGTGTCAAAATTGGAATAGAGAATTGTGAATTGCCCTATCATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU464976 True 328 lncRNA 0.27 1 1316276 1316603

Neighbor

gene id symbol gene type direction distance location
CI01000299_01197545_01215711 NA coding upstream 100287 1197422 ~ 1215989 (+)
CI01000299_01139684_01147241 NA coding upstream 169028 1139497 ~ 1147248 (+)
CI01000299_01049508_01055558 NA coding upstream 260540 1049390 ~ 1055736 (+)
CI01000299_01036243_01046776 NA coding upstream 268673 1035037 ~ 1047603 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 404304 862803 ~ 911972 (+)
CI01000299_01855614_01858092 SLITRK6 coding downstream 539011 1855614 ~ 1858703 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 800258 2116861 ~ 2121858 (+)
CI01000299_02195854_02198465 NA coding downstream 879195 2195798 ~ 2198925 (+)
CI01000299_02612562_02613926 NA coding downstream 1295896 2612499 ~ 2614792 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding downstream 1380029 2696632 ~ 2704220 (+)
G404436 NA non-coding upstream 104405 1211655 ~ 1211871 (+)
G404424 NA non-coding upstream 120540 1195477 ~ 1195736 (+)
G404385 NA non-coding upstream 174640 1141356 ~ 1141636 (+)
G404075 NA non-coding upstream 188832 1125740 ~ 1127444 (+)
G404603 NA non-coding downstream 87154 1403757 ~ 1404012 (+)
G404709 NA non-coding downstream 287740 1604343 ~ 1604683 (+)
G404716 NA non-coding downstream 315241 1631844 ~ 1632341 (+)
G404735 NA non-coding downstream 371276 1687879 ~ 1689001 (+)
G404738 NA non-coding downstream 383637 1700240 ~ 1700456 (+)
G403972 NA other upstream 709926 604870 ~ 606350 (+)
G403609 NA other upstream 905488 364139 ~ 410788 (+)
G403578 NA other upstream 1244005 35462 ~ 72271 (+)
G405609 NA other downstream 1837994 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 2814655 4131060 ~ 4133941 (+)
G405842 NA other downstream 2978930 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3173215 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3385779 4703071 ~ 4704780 (+)

Expression


Co-expression Network