G405390


Basic Information

Item Value
gene id G405390
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2730273 ~ 2730509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU465878
CTTGTCGTAAACACCCAATAAATCGAGACGAAATGAATTGCAATTCGCAATTGTTATTTTAAATATTGCCTACATGAAACGGCGGTGGATTAATAACATGGAAAACAGTCTGCACAGGCGACGTGAGGCCGAAACTCTGATATTTTCGCCTTGACCCGAGAAGATTGGAGCATCCCGCCCCTCTATACCGTAAATGAGCGCCGGGCTGCGGTGCTGAAGCTGGCTGTGACTCAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465878 True 237 lncRNA 0.46 1 2730273 2730509

Neighbor

gene id symbol gene type direction distance location
CI01000299_02706136_02711943 STK16 coding upstream 16533 2705873 ~ 2713740 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding upstream 26053 2696632 ~ 2704220 (+)
CI01000299_02612562_02613926 NA coding upstream 115481 2612499 ~ 2614792 (+)
CI01000299_02195854_02198465 NA coding upstream 531348 2195798 ~ 2198925 (+)
CI01000299_02118245_02120332 SLITRK1 coding upstream 608415 2116861 ~ 2121858 (+)
CI01000299_02753238_02760499 PUR9, ATIC coding downstream 22729 2753238 ~ 2760953 (+)
CI01000299_02813216_02818668 CPO coding downstream 82632 2813141 ~ 2819096 (+)
CI01000299_03144958_03149338 NA coding downstream 413881 3144390 ~ 3149340 (+)
CI01000299_03157191_03166687 ABCB6, ABCB6A coding downstream 426682 3157191 ~ 3166701 (+)
CI01000299_03170577_03174986 CNPPD1 coding downstream 440068 3170577 ~ 3175003 (+)
G405385 NA non-coding upstream 8949 2720862 ~ 2721324 (+)
G405329 NA non-coding upstream 15132 2659354 ~ 2715141 (+)
G405366 NA non-coding upstream 74860 2655180 ~ 2655413 (+)
G405365 NA non-coding upstream 76657 2653406 ~ 2653616 (+)
G405364 NA non-coding upstream 77120 2652908 ~ 2653153 (+)
G405407 NA non-coding downstream 79943 2810452 ~ 2810672 (+)
G405611 NA non-coding downstream 478417 3208926 ~ 3209411 (+)
G405618 NA non-coding downstream 590015 3320524 ~ 3321012 (+)
G405619 NA non-coding downstream 590686 3321195 ~ 3321433 (+)
G405621 NA non-coding downstream 603718 3334227 ~ 3335205 (+)
G403972 NA other upstream 2123923 604870 ~ 606350 (+)
G403609 NA other upstream 2319485 364139 ~ 410788 (+)
G403578 NA other upstream 2658002 35462 ~ 72271 (+)
G405609 NA other downstream 424088 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 1400749 4131060 ~ 4133941 (+)
G405842 NA other downstream 1565024 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1759309 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1971873 4703071 ~ 4704780 (+)

Expression


Co-expression Network