G406884


Basic Information

Item Value
gene id G406884
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3154600 ~ 3155118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU467520
CCCCTTTTGCTGCCAAAACAGCCCTGACCTGTCGAGGCATGGACTCCACTAGACCCCTGAAGGTGTGCTGTGGTATCTGGCACCAAGATGTTAGCAGCAGATCATTTAAGTCCTGTAAGTTGCGAGGTGGAGCCTCCATGGATCGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGCCAAGTCAACACCTCAAACTTGTTGTTGTGCTCCTCAAACCATTCCTGAACCATTTTTGCTTTGTGGCAGGGCGCATTATCCTGCTGAAAGAGGCCACAGCCACCAGGGAATACCGTTTCCATGAAAGGGTGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACGTGTCAAAGTAACATCTACATGGATCAAGGTTTCCCAGCAGAACATTGCCCAAAGCATCACACTGCCTCCGCCAGCTTGCCTTCTTCCCATAGTGCATCCTGGTGTCATGTGTTGGATCGAACCACACAGGCCAGCCTTCGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU467520 True 519 lncRNA 0.51 1 3154600 3155118

Neighbor

gene id symbol gene type direction distance location
CI01000299_03104921_03106385 NA coding downstream 48215 3104605 ~ 3106385 (-)
CI01000299_02951402_03057288 PARD3BA coding downstream 97312 2951402 ~ 3057288 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 249454 2891574 ~ 2905146 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding downstream 277737 2850281 ~ 2876863 (-)
CI01000299_02833341_02845817 NA coding downstream 308730 2833090 ~ 2845870 (-)
CI01000299_03206204_03214303 MDH1B coding upstream 51067 3206185 ~ 3214303 (-)
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding upstream 185648 3340766 ~ 3366728 (-)
CI01000299_03492360_03492614 NA coding upstream 337096 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 979702 4134820 ~ 4142125 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding upstream 1002883 4158001 ~ 4164715 (-)
G406868 NA non-coding downstream 33347 3120997 ~ 3121253 (-)
G406842 NA non-coding downstream 96594 3057706 ~ 3058006 (-)
G406790 NA non-coding downstream 225051 2929340 ~ 2929549 (-)
G406786 NA non-coding downstream 232215 2921310 ~ 2922385 (-)
G406779 NA non-coding downstream 325145 2829217 ~ 2829455 (-)
G406858 NA non-coding upstream 3278 3158396 ~ 3204366 (-)
G406889 NA non-coding upstream 11413 3166531 ~ 3169255 (-)
G406872 NA non-coding upstream 19255 3174373 ~ 3175921 (-)
G406862 NA non-coding upstream 41175 3196293 ~ 3196999 (-)
G406912 NA non-coding upstream 84191 3239309 ~ 3239848 (-)
G405053 NA other downstream 1136550 2017687 ~ 2018050 (-)
G404976 NA other downstream 1273612 1855639 ~ 1880988 (-)
G404784 NA other downstream 1494600 1659655 ~ 1660000 (-)
G404372 NA other downstream 2078709 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2481744 670680 ~ 673625 (-)
G407413 NA other upstream 1320876 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1770850 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2286219 5427661 ~ 5443433 (-)

Expression


Co-expression Network