G406872


Basic Information

Item Value
gene id G406872
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3174373 ~ 3175921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU467508
GTTTTTATTACTTTTGTTGTTGCAGCTATATGTTCTCTTATAATTTCTATACAAAATGTACAAAATTCATGAAAATACAGAAGTCATGAAGAAATTATGGTGGATATGTAAGAGCTCACTAAATCAGGTGCTTTTTTTTATGCCCAAGTCCTAATATATCGTTTGCTTACTTACATTTAAAGAACATAAAATAAAGTCAAATTAAACTCATTAACAAAGCAATGAACCCAAATAAATCTATCAAATTAGCCCGTTCAGTAATTCCAATGTGTTATCACTTCAGGATATCAAAATATCGAGGATCGTTACAAAATGGTCAAATAAAGCATTCTTTGATCAGTGCTTTGTGGACGAGGTATGGCATCAACTATCTAAACATTACGTATATCTTAAACTAAATTGTAAAACTGATCCCTTTTTGCTTTTCTTCTACCCATCCTCTCTGAAACCAAGTGAACAAAACCAGGCTTAAATTCAAACCCAACTTGAAAATAAAGGCTTTCTCAGGAAGGAACTTCATAACAATACAGCCAGACGAACTATTCAAAACAAGAGCACGCACTTCCGGCATAAGAGAAGACCCCTCCGTTAACTTATGTAACATTATTTTTGTTTGTATGCATTAGAGGTTTCATGTAACACCTAAAAACAACCAAACCCATCCGGAAAAGGAAAGAAAAAAAAAAAAAAAACCCGTTCATTTATACTGCATTAGCGTGCACTGCATCACACGTCAAAATTCAAACTATCAATCAGCACATAAACCTCCTTACCACCTTCCCCCCAACATACTGATATCACACCACAACCCGGTTATATCCAACCTATATCACTGGTTCATATACAACAAGGGAGTTGACTGTGTATGTAAACTTAGCTGGTTTATTTTGCTATTGCGAATTGGGGGAAACTGCCCGTGTGGGCGTTACAGATCACTTCGGATACCAAACAGTCTTGTGGCTGGATGTCCAACGAGGGGTCTGAGTAGGAAAGAGTAGAGAGGATGGAGCCCCAGAGACAGAGCGCCATGTTCTGATAGGATGAAGAGGTAGGCTGCTCGGGCACAGCGGTGGGCCGTGGCTTCAAGCTGTCGTTGGTCAGGATGCAGCAATGGAGGTTTGAGGTCGGCTGAGGCATGTCCAGCAAGAGCTCAGGGAGGAGCGTTGGTGTCTGAATGGATGTGTGCGTAATCGGGTCCAAGTAAGTGTGGCTGGTGTTAGGAAGACGGCTGAGCTGGTGGATGACAGCGGAAGAAGCAATGAGGCCGGCTACGCTTGTCAAGTACAGGAGACCCAACATACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467508 True 1304 lncRNA 0.41 3 3174373 3175921

Neighbor

gene id symbol gene type direction distance location
CI01000299_03104921_03106385 NA coding downstream 67988 3104605 ~ 3106385 (-)
CI01000299_02951402_03057288 PARD3BA coding downstream 117085 2951402 ~ 3057288 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 269227 2891574 ~ 2905146 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding downstream 297510 2850281 ~ 2876863 (-)
CI01000299_02833341_02845817 NA coding downstream 328503 2833090 ~ 2845870 (-)
CI01000299_03206204_03214303 MDH1B coding upstream 30264 3206185 ~ 3214303 (-)
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding upstream 164845 3340766 ~ 3366728 (-)
CI01000299_03492360_03492614 NA coding upstream 316293 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 958899 4134820 ~ 4142125 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding upstream 982080 4158001 ~ 4164715 (-)
G406889 NA non-coding downstream 5118 3166531 ~ 3169255 (-)
G406884 NA non-coding downstream 19255 3154600 ~ 3155118 (-)
G406868 NA non-coding downstream 53120 3120997 ~ 3121253 (-)
G406842 NA non-coding downstream 116367 3057706 ~ 3058006 (-)
G406790 NA non-coding downstream 244824 2929340 ~ 2929549 (-)
G406862 NA non-coding upstream 20372 3196293 ~ 3196999 (-)
G406912 NA non-coding upstream 63388 3239309 ~ 3239848 (-)
G406932 NA non-coding upstream 113541 3289462 ~ 3295137 (-)
G406942 NA non-coding upstream 127831 3303752 ~ 3305190 (-)
G406941 NA non-coding upstream 136462 3312383 ~ 3316446 (-)
G405053 NA other downstream 1156323 2017687 ~ 2018050 (-)
G404976 NA other downstream 1293385 1855639 ~ 1880988 (-)
G404784 NA other downstream 1514373 1659655 ~ 1660000 (-)
G404372 NA other downstream 2098482 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2501517 670680 ~ 673625 (-)
G407413 NA other upstream 1300073 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1750047 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2265416 5427661 ~ 5443433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G1039 NA non-coding NC_053112.1 CM020909.1 3081747 ~ 3081962 (-)
tiger barb (Puntius tetrazona) G978 NA non-coding NC_056699.1 CM032068.1 4935720 ~ 4937688 (-)