G406941


Basic Information

Item Value
gene id G406941
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3312383 ~ 3316446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU467587
AGAAAAACCCATGTGGAGCTCTGAAAGCTGTTATCCAGTCAACAGTCACCCATTTCAGAGCATGTGAACGGTGCAAAATTGAAGTTGTACATAAAGTCAAAAGCAGCAGCTTTCTTTTAATGAACACCAGCAGAAAGCTGGAGCCTGATCTCAGTCTGAAGCCTCTGGTCTTTAGAAAGGCAGGGTACATTTAGGGTGTGTTCACACTTGGCAGATTTGGTTCGATTAAAAAAAATTCTGGTGAGGTGCTCTGTTGATGCAGTTCATTTGAATAAGTGTGAACCTTGGTGTGCACCCAACAAGCGGACCAGCTTTTTGGTGCAGTTTGACTAAATATAAACATAACACGGACATGCGACCCTACATGCGACTCTACCTATTTTTTCTCGTCATATGATCTATATGTTGCCCATTACACTTCAGTACAGGCGTCAGAACCATGTCTCCTTGCAGCAGATCTTTGTGTTCAACAAAGGAACACTTTTTGTTAAACTGGTTAAAACTCTCTTCACATCCAGCAATCAATAATAGAAGTATTCTAAATATTAAATACATATCTTCTGTGGATTTCTCAGGACCAAAAAATGTCTGTTCAATTGGTCCTAATGCAATGATATGATCTCCTACCTGCCTGTCAACATGTATTTACATTCCTCCGCGCACCTGCTCGCGCAGACGTCATCAGCGTAAGCGGCGCGACACAACACGTCAAAAGACAACAGAACCCATTATAATCAGTGATACTGTCTACACTCTATGCGGCGCGGGGCGAATTCCCGACAGTAAACGGATTCCCCGTTCTATTTCTGACATAGTCCAAGTGCTTTGAAAAGTTCAGTTTGTCGCGTTCAGCGTAGACAGCTTTTAGCTGTTGCGGCGCGATGCAATGCGACAACTGTAAGGCTATGCAGAGTTGTAGACAGACAGTCACCGAGCACCACAAACAAACAGCGGCCACATTTCACCGTTCCTCCTGAACCAAAACAACAAGCTTATGCTGCGTTGTATATGTGTCGTAACCGCAATTACAAGATGGCAACCCGTGACGATGTCCTCGGACTCGGATTTATGTGTTTCTATGTCAACACTATTAACGCCGAAATGATTCTGCAGCAGTCAGCTGGTACAAGTAAGAGCTCTGTAAGTTGTTGACGTTCATTATTATTGTAATGTTATGTGCTTTGAGACATGAGGTAATTTAACACAGACTCTGCTGTGTGTTTTGAAGGAGGAGTGGCTTTGAAGACGCTCTGAAGGGAGGGTGGGATCTTATACTTTCAAAGCTAGTTTTTTATTGCTAGCCTCTCCTGATAAAAAAAAAAATACCACTATGACACACACACACAACGAGCACATTTAGCCCAACACAAAGGACAAATGGTGCTTTGCCACGTCAAAACAAGTCATTTCACTCGGCGACCATCTTTGAAACGCCTCTGGGGAATGCAAGTGCAGCTCCTATCTCTTTGAATGGGGAAACATCAAATTTTCCAAAGCTGTTTGCCAAGCTTTCAATTAAATTTCATAAATTTTGTTTCTAAACGCTCGAATCATGACAAAAAAACCTGTATTTTTCAGGCTGGATCAAGCTAATGCACATGTGCAGTCCTAAGCGCATCTGACTGTTTCTATAGGAACCAAAGTTCTAATAGCCGCTGCAGTGACGCGATGACTTTACCAATCGGCGATTGGCTACGAGTGATGCGTCTAGTGTTATTCTATAGTCTTTGGTCGCATACAGTGTAGACAGCTTTTAGCTGTTGTGATGCAAGCGACAACATCCGGTGTAGTGTTAAAATGACAGTGTGAACGCTAAGCGAACCAGGACTAAATGTATAATTTTTTTGTTTTTTTGATTCGGACCAAAACAAACCAAGAGAACTGGATAACAAGTGTGAACACACCCTTAAAGGAACAGTTTGCCGAAAAATGGAAAGTCTGACATTGTTTACTCACCCTCAAGTCTTAATCCACATGATGTTCTTTCTTCCAAGGAACGCTGGATTTGATGGTGCTTTTTACATTCCCAGGCTTCATTAACATTCACTGTATGGAGAATAGCAGCCTGGACATTCTGAGAAATAACTTTTCTAAGTCATACAGCTTTGGAAAGACATGAGGGTGAATAAAGGACAGAAATTACATTTTTGGCTGAACTATTCCATTACATCACCTGATGATAAATGTTAATACATGTTAGACATACTGCATCCACATCAGCAATGCATTTTCATCTTCAAACAACAACAAAAAGCATAATTGAGGACACATTTTATAGCTCCTTTATATTTAGTTGTAAAACAGCATTGTGAAAAAAACTACTCTAAAAAGTCAAATTAGGAGGAAAAAATTGGGTGTTTAAAAACATTTGTCTTTTAATATTTGTTTTAATAAAATTTCTAATAAAACATGGACAGAAGTGGGGTTGGGACAGTCTACGGCAGCCCTAAACCTTTGGTACATTCAGCACAAATATCAACGCAAAAGCCTTAATACAAAAAACAAAGATCTATCTGGTTTGTATTAATGACCTAGCCAGCCAAAATTGAATTGACAAAGAGGATATGCTTGTATTTTTCTTCTGTTGCTATTCCAAAATTTGATGGACCTCATGGCAGTTTCAACTACGCCAGTTTTCACTGGAAGCGATATTAATTTCTTACACAAAAATTCAGGTTACAAAACATTCAGAACTAGAGTACAATCCAGCGTTCCTCAGCCACGGCAGTGTTTCATAAAAGGCTGGGTTGAGTGAACGCAAACGGAAAGGTCTGGAATGTATTGATATGGTTTTTTTTGTGGGCTTGATATTCCAGTTTCAAATCATACAAGAAAACACGGTCAGACTCGAGAGTAGAGTACAAAAATGAAAAGGAAAAGGGGGGAAAACATTCAAGAAAGCTGTGTTGACATCAGCAAACATTCATGTAAACTAAAGCTATATGAGGATATGGAAATAATAATAAAGTCATCATGAAATAAGCCATTTTGAAATGGTTTGGGTCAGTTTTAATTTCATGTTGACTTGTTGAGTGGGTATATGTGACCATTCTCTCTTTCAAAATGTCATCAGAAATAAAACTGTCATCTGAGGACAACGGAAAGGTCAGAAGGTCATAAAATCATCATTTTTCTATCATTTAGTGGTCACATTCATGATGTTGTAGTGCGTCAGTGTAACATGCCCTTTGAAAACGTCACGTGTGAGAGCACATGCACAACCAAAATCATTCAAAAGTGTCACAAATCTGACACGACAGCTGGACAGAATACGCTTTCAAAACAAACATGTGACATGGACTCGTGTATAAATATGATAAAAAGAAGAGAGAACACACATTTCAATTCAATATACAGGGCAGCGCTGTCATGTGTCTTGCTTGAGGCGATCTGAGACGTCTGAAAAAGCTCACAACACTATATTTGTTCATTCACGCTGTATTTTGATGCTCCGTAAAAAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTGATACGGTGTACAAAATATAGTGCTTCTGGTGTCTGTTACTTCCTTTGCTCTTCTAGACGTGTTGAGGAAATGTATTTGTTCAGCTCAAAGTGCAAAGGTCAACATTCACTCCAAACCGAAAGTGCTGGTCTCCTCCACTGCCGTCAGCATCTTCTCGTACAGCATGGAGAAGGAGGGATACGGGGGGAGGTCCAGACGGTTGAAACATGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467587 True 3711 lncRNA 0.40 4 3312383 3316446

Neighbor

gene id symbol gene type direction distance location
CI01000299_03206204_03214303 MDH1B coding downstream 98080 3206185 ~ 3214303 (-)
CI01000299_03104921_03106385 NA coding downstream 205998 3104605 ~ 3106385 (-)
CI01000299_02951402_03057288 PARD3BA coding downstream 255095 2951402 ~ 3057288 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 407237 2891574 ~ 2905146 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding downstream 435520 2850281 ~ 2876863 (-)
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding upstream 24320 3340766 ~ 3366728 (-)
CI01000299_03492360_03492614 NA coding upstream 175768 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 818374 4134820 ~ 4142125 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding upstream 841555 4158001 ~ 4164715 (-)
CI01000299_04171373_04175441 NA coding upstream 854703 4171149 ~ 4175441 (-)
G406942 NA non-coding downstream 7193 3303752 ~ 3305190 (-)
G406932 NA non-coding downstream 17246 3289462 ~ 3295137 (-)
G406912 NA non-coding downstream 72535 3239309 ~ 3239848 (-)
G406862 NA non-coding downstream 115384 3196293 ~ 3196999 (-)
G406872 NA non-coding downstream 136462 3174373 ~ 3175921 (-)
G406927 NA non-coding upstream 17597 3334043 ~ 3335207 (-)
G406928 NA non-coding upstream 57474 3373920 ~ 3401249 (-)
G406971 NA non-coding upstream 98557 3415003 ~ 3415287 (-)
G406972 NA non-coding upstream 101638 3418084 ~ 3418322 (-)
G406978 NA non-coding upstream 120341 3436787 ~ 3437005 (-)
G405053 NA other downstream 1294333 2017687 ~ 2018050 (-)
G404976 NA other downstream 1431395 1855639 ~ 1880988 (-)
G404784 NA other downstream 1652383 1659655 ~ 1660000 (-)
G404372 NA other downstream 2236492 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2639527 670680 ~ 673625 (-)
G407413 NA other upstream 1159548 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1609522 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 2124891 5427661 ~ 5443433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G1487 LOC103369331 unknown NC_053112.1 CM020909.1 4455207 ~ 4460404 (+)
tiger barb (Puntius tetrazona) G1414 NA unknown NC_056699.1 CM032068.1 6533502 ~ 6536957 (+)