G405621


Basic Information

Item Value
gene id G405621
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3334227 ~ 3335205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466114
GCATAAATATAGGAGCAAAGTGGAAAGCATGAAATGCCTGCAAAAAGCAGAGGGCTCGGAAACGGATTTAATTTACAGCAGGAAGTGTGGAAAAAAGCCTTTAACCGGAAAACTACGCTACGAGTGCAACAAACATCGGAAATCACTCTATTAGCTTCATACCATCCATTTGGAAGCTTTTAGCACAGCGTTTTGAGCAATAGAAGGGAAAAAAAAAACCCAATGTGTTAGATGGCTAGTGAGCGAATGGAGTCCAGCTGCTAACATGAATGTACAGACAATCCAAAAACAATGTACAGACCTCTAAAACAGACTAATAGTAATATTACGAGATATGAAATGCATTCAAACTCCTAATTTAGTGTTCCCTGCATGTGTAGTAGTGTCTCAGCTCGTGCCAGAACTTTAGGATGTAAATTTTACATTGTAGAATGTAAAAGTGTACCTGCAAGTGTGCATCGGTAATTACAAATAATTGCATTATCCCACAGCAAAAAGGTCAGTAAGTTGTCTGTGTGATTTAAAAGCTGTTTAAGTGGGTAACATACAAGGTTTATACACACTCGAGAAAAACGAAAGACAGTGCACATAAAACAAGCCCCAAAAAAGCAGACAACAAGCTTCTCTGTGGGGCTTCACAGGACCATAAAGACAAACTCATTAGCTAGTTTTTTTTTTGCCAAGGTAACATCCCTAATTGGTCCTGCTGGAGGGTGTTAAAAAGGATTTTAAGGGAAAGGTGCACTTAAAGTGAACAAACGGTCAGAAGTCCACAAGGAAAACTACTAGTAAACATCATATGTCATGATTCACAGAATGCAATAACTTGACAAGCTCAATGAGAAGTTTAGCACAAGACTTGTGATGAAACACTGTTTCTATCCATTAGCAGGAATTAAGGTACACTGTGAATCTTCACAAAACCTGACAAAAAATGCCCAGGTCATATTACACCCCAAAATTAAGATTAATTATCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466114 True 979 lncRNA 0.38 1 3334227 3335205

Neighbor

gene id symbol gene type direction distance location
CI01000299_03268500_03312490 HECW2 coding upstream 20899 3268193 ~ 3313328 (+)
CI01000299_03267154_03267336 NA coding upstream 66836 3267154 ~ 3267391 (+)
CI01000299_03237334_03244737 GTF3C3 coding upstream 89412 3237334 ~ 3244815 (+)
CI01000299_03215678_03230586 NA coding upstream 103641 3215678 ~ 3230586 (+)
CI01000299_03189537_03200831 FAM134A coding upstream 132821 3189319 ~ 3201406 (+)
CI01000299_03366963_03373293 NA coding downstream 31613 3366818 ~ 3373682 (+)
CI01000299_03382616_03423028 NA coding downstream 47286 3382491 ~ 3423697 (+)
CI01000299_03453437_03453736 NA coding downstream 117095 3452300 ~ 3454209 (+)
CI01000299_03478949_03486009 NA coding downstream 140883 3476088 ~ 3486009 (+)
CI01000299_03495286_03498691 NA coding downstream 159334 3494539 ~ 3498729 (+)
G405619 NA non-coding upstream 12794 3321195 ~ 3321433 (+)
G405618 NA non-coding upstream 13215 3320524 ~ 3321012 (+)
G405611 NA non-coding upstream 124816 3208926 ~ 3209411 (+)
G405407 NA non-coding upstream 523555 2810452 ~ 2810672 (+)
G405390 NA non-coding upstream 603718 2730273 ~ 2730509 (+)
G405660 NA non-coding downstream 71380 3406585 ~ 3406810 (+)
G405663 NA non-coding downstream 75329 3410534 ~ 3410764 (+)
G405690 NA non-coding downstream 127173 3462378 ~ 3462582 (+)
G405693 NA non-coding downstream 132313 3467518 ~ 3467780 (+)
G405695 NA non-coding downstream 133792 3468997 ~ 3469199 (+)
G405609 NA other upstream 179053 3154597 ~ 3155174 (+)
G403972 NA other upstream 2727877 604870 ~ 606350 (+)
G403609 NA other upstream 2923439 364139 ~ 410788 (+)
G403578 NA other upstream 3261956 35462 ~ 72271 (+)
CI01000299_04131136_04133439 PCNP other downstream 796053 4131060 ~ 4133941 (+)
G405842 NA other downstream 960328 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1154613 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1367177 4703071 ~ 4704780 (+)
G406096 NA other downstream 1589257 4924462 ~ 4927844 (+)

Expression


Co-expression Network