G406993


Basic Information

Item Value
gene id G406993
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3481099 ~ 3481542 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU467640
TAGATCTTCTTGTACAGTTGGAGGGAACTGGATCCTATATAAGCTTTCCGAAAAGGGAGCAGGGCTGCATAGAATCCATATTCCAGCTCAAAATCCAAGGTGTAGCTGAGCAGAGCGAGGCAGCCTCCTGGCCTCAGAATCCTGTCTGCCTCCCGCAGGAAGCGCGGATGGTCAAACCAGTGAGCAGCTGACATGGATGTAACCAAGTCGGCCACATCATCCTCAAAGGGCAACTCCTCTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU467640 True 243 lncRNA 0.52 2 3481099 3481542

Neighbor

gene id symbol gene type direction distance location
CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding downstream 114371 3340766 ~ 3366728 (-)
CI01000299_03206204_03214303 MDH1B coding downstream 266796 3206185 ~ 3214303 (-)
CI01000299_03104921_03106385 NA coding downstream 374714 3104605 ~ 3106385 (-)
CI01000299_02951402_03057288 PARD3BA coding downstream 423811 2951402 ~ 3057288 (-)
CI01000299_02891830_02905146 NRP2B, NRP2A, NRP2 coding downstream 575953 2891574 ~ 2905146 (-)
CI01000299_03492360_03492614 NA coding upstream 10672 3492214 ~ 3493144 (-)
CI01000299_04136702_04142005 NA coding upstream 653278 4134820 ~ 4142125 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding upstream 676459 4158001 ~ 4164715 (-)
CI01000299_04171373_04175441 NA coding upstream 689607 4171149 ~ 4175441 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding upstream 703425 4184967 ~ 4197884 (-)
G407023 NA non-coding downstream 3115 3477600 ~ 3477984 (-)
G407020 NA non-coding downstream 5303 3475530 ~ 3475796 (-)
G407015 NA non-coding downstream 8476 3472121 ~ 3472623 (-)
G407012 NA non-coding downstream 11721 3469091 ~ 3469378 (-)
G407011 NA non-coding downstream 13347 3467259 ~ 3467752 (-)
G407030 NA non-coding upstream 23364 3504906 ~ 3560018 (-)
G407112 NA non-coding upstream 150879 3632421 ~ 3634581 (-)
G407117 NA non-coding upstream 156248 3637790 ~ 3643952 (-)
G407119 NA non-coding upstream 163052 3644594 ~ 3655355 (-)
G407232 NA non-coding upstream 432479 3914021 ~ 3920821 (-)
G405053 NA other downstream 1463049 2017687 ~ 2018050 (-)
G404976 NA other downstream 1600111 1855639 ~ 1880988 (-)
G404784 NA other downstream 1821099 1659655 ~ 1660000 (-)
G404372 NA other downstream 2405208 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 2808243 670680 ~ 673625 (-)
G407413 NA other upstream 994452 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 1444426 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 1959795 5427661 ~ 5443433 (-)

Expression


Co-expression Network