Gene
RNA
| Item | Value |
|---|---|
| gene id | G405578 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 3893020 ~ 3912958 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466070 | True | 19919 | lncRNA | 0.36 | 2 | 3893020 | 3912958 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_03594891_03678552 | ERBB4 | coding | upstream | 213408 | 3594891 ~ 3679612 (+) |
| CI01000299_03495286_03498691 | NA | coding | upstream | 394291 | 3494539 ~ 3498729 (+) |
| CI01000299_03478949_03486009 | NA | coding | upstream | 407011 | 3476088 ~ 3486009 (+) |
| CI01000299_03453437_03453736 | NA | coding | upstream | 438811 | 3452300 ~ 3454209 (+) |
| CI01000299_03382616_03423028 | NA | coding | upstream | 469323 | 3382491 ~ 3423697 (+) |
| CI01000299_03981006_04059237 | ERBB4 | coding | downstream | 68048 | 3981006 ~ 4059237 (+) |
| CI01000299_04105476_04115171 | LANCL1 | coding | downstream | 192518 | 4105476 ~ 4115227 (+) |
| CI01000299_04122601_04126314 | MLE3, MYLZ3, MYL1 | coding | downstream | 209643 | 4122601 ~ 4126381 (+) |
| CI01000299_04131136_04133439 | PCNP | coding | downstream | 218102 | 4131060 ~ 4133941 (+) |
| CI01000299_04259743_04263032 | ENG1B, EN1 | coding | downstream | 345963 | 4258921 ~ 4263493 (+) |
| G405742 | NA | non-coding | upstream | 109094 | 3778033 ~ 3783926 (+) |
| G405710 | NA | non-coding | upstream | 167840 | 3698428 ~ 3725180 (+) |
| G405579 | NA | non-coding | upstream | 335917 | 3552314 ~ 3557103 (+) |
| G405575 | NA | non-coding | upstream | 357322 | 3505295 ~ 3535698 (+) |
| G405569 | NA | non-coding | downstream | 152173 | 4065131 ~ 4065565 (+) |
| G405797 | NA | non-coding | downstream | 163847 | 4076805 ~ 4077037 (+) |
| G405568 | NA | non-coding | downstream | 166017 | 4078975 ~ 4116184 (+) |
| G405573 | NA | non-coding | downstream | 216036 | 4128994 ~ 4129600 (+) |
| G405577 | NA | non-coding | downstream | 266892 | 4179850 ~ 4196335 (+) |
| G405609 | NA | other | upstream | 737846 | 3154597 ~ 3155174 (+) |
| G403972 | NA | other | upstream | 3286670 | 604870 ~ 606350 (+) |
| G403609 | NA | other | upstream | 3482232 | 364139 ~ 410788 (+) |
| G403578 | NA | other | upstream | 3820749 | 35462 ~ 72271 (+) |
| G405842 | NA | other | downstream | 382575 | 4295533 ~ 4320141 (+) |
| CI01000299_04480751_04492829 | NA | other | downstream | 576860 | 4480553 ~ 4493116 (+) |
| CI01000299_04703290_04704365 | NA | other | downstream | 789424 | 4703071 ~ 4704780 (+) |
| G406096 | NA | other | downstream | 1011504 | 4924462 ~ 4927844 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_019173 | CU462980.1 | non-coding | NC_007132.7 | CM002905.2 | 42891618 ~ 42985641 (+) |
| grasscarp (Ctenopharyngodon idella) | G132868 | NA | non-coding | CI01000026 | null | 9787856 ~ 9788078 (+) |
| eurasian perch (Perca fluviatilis) | G112069 | NA | non-coding | NC_053122.1 | CM020919.1 | 4429027 ~ 4480919 (-) |
| tiger barb (Puntius tetrazona) | G102209 | NA | non-coding | NC_056712.1 | CM032081.1 | 25751779 ~ 25752136 (+) |
| mexican tetra (Astyanax mexicanus) | G111787 | NA | non-coding | NC_035909.1 | CM008312.1 | 17617664 ~ 17617996 (+) |
