Gene
RNA
| Item | Value |
|---|---|
| gene id | G407288 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4121679 ~ 4127640 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU467957 | False | 1438 | lncRNA | 0.48 | 6 | 4121679 | 4126723 |
| TU467958 | False | 2746 | lncRNA | 0.42 | 3 | 4123317 | 4127640 |
| TU467959 | False | 2645 | lncRNA | 0.42 | 4 | 4123317 | 4127640 |
| TU467956 | True | 1614 | lncRNA | 0.47 | 4 | 4123490 | 4126723 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_03492360_03492614 | NA | coding | downstream | 628535 | 3492214 ~ 3493144 (-) |
| CI01000299_03341031_03366645 | KLF7, KLF7A, KLF7B | coding | downstream | 754951 | 3340766 ~ 3366728 (-) |
| CI01000299_03206204_03214303 | MDH1B | coding | downstream | 907376 | 3206185 ~ 3214303 (-) |
| CI01000299_03104921_03106385 | NA | coding | downstream | 1015294 | 3104605 ~ 3106385 (-) |
| CI01000299_02951402_03057288 | PARD3BA | coding | downstream | 1064391 | 2951402 ~ 3057288 (-) |
| CI01000299_04136702_04142005 | NA | coding | upstream | 7180 | 4134820 ~ 4142125 (-) |
| CI01000299_04158468_04164223 | MX2, MX1, MXB, MX, MXA | coding | upstream | 30361 | 4158001 ~ 4164715 (-) |
| CI01000299_04171373_04175441 | NA | coding | upstream | 43509 | 4171149 ~ 4175441 (-) |
| CI01000299_04186183_04196219 | MX1, MXB, MXA | coding | upstream | 57327 | 4184967 ~ 4197884 (-) |
| CI01000299_04227918_04239792 | EFNB2B | coding | upstream | 99880 | 4227520 ~ 4239792 (-) |
| G407306 | NA | non-coding | downstream | 55031 | 4066205 ~ 4066648 (-) |
| G407303 | NA | non-coding | downstream | 71852 | 4049542 ~ 4049827 (-) |
| G407280 | NA | non-coding | downstream | 83895 | 4034732 ~ 4037784 (-) |
| G407232 | NA | non-coding | downstream | 200858 | 3914021 ~ 3920821 (-) |
| G407119 | NA | non-coding | downstream | 466324 | 3644594 ~ 3655355 (-) |
| G407318 | NA | non-coding | upstream | 1363 | 4129003 ~ 4129220 (-) |
| G407296 | NA | non-coding | upstream | 29185 | 4156825 ~ 4179627 (-) |
| G407330 | NA | non-coding | upstream | 80157 | 4207797 ~ 4208154 (-) |
| G407340 | NA | non-coding | upstream | 131842 | 4259482 ~ 4263461 (-) |
| G407343 | NA | non-coding | upstream | 138714 | 4266354 ~ 4266553 (-) |
| G405053 | NA | other | downstream | 2103629 | 2017687 ~ 2018050 (-) |
| G404976 | NA | other | downstream | 2240691 | 1855639 ~ 1880988 (-) |
| G404784 | NA | other | downstream | 2461679 | 1659655 ~ 1660000 (-) |
| G404372 | NA | other | downstream | 3045788 | 1070607 ~ 1075891 (-) |
| CI01000299_00670925_00672195 | NA | other | downstream | 3448823 | 670680 ~ 673625 (-) |
| G407413 | NA | other | upstream | 348354 | 4475994 ~ 4550721 (-) |
| CI01000299_04913779_04927715 | NA | other | upstream | 798328 | 4913373 ~ 4927715 (-) |
| CI01000299_05428160_05443433 | APP, APPA | other | upstream | 1313697 | 5427661 ~ 5443433 (-) |
