G405573


Basic Information

Item Value
gene id G405573
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4128994 ~ 4129600 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466065
GCTAAAGTCCTGCTGGAAAAGGAAATCAGCATCTCCATAAAGCTTGTCAGCAGATGGAAGCATAAAGTGCTCCAAAATCTCCTGGAAGATGGCTGCATTGACTCTGCACTTGATAAAACACAATGGACCAACACCAGCAGACGTCACGGCCCCCCCAAATCATTATTGACTTCAGAAACTTCACACTAGACTTCAAGCAGCTTGGATTCTGTGCCTCTCCAGGCTTCCTTCAGACTCTGGGACCATGATTTCAACATGAAATGCAAAATTTACTTTTATCTGAAAAGAGGACTTTCGACCACTGTTCACTGTCCAGTTCTTTTTCTCCTTAGCCCAGGTAAGATGCTTCTGACGTTGTCTCTGGTTCAGAAGTGGCTTGGTAGTCCTTTTCCTGAAGATGTCTGAGTGTGGTGACTCTTGATGCGCTGACTCCGGCTTCATTCTACTCATTGTGAAGCTCTCCCAAGTGTTTGAATTGGCTTTACTTGACAGTATTCTCAAGCTTGCGGTCATCCCTGTTGCTTATGCACCTTTGCCTACCCAATTGCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATATACACTCTGTAAACAGCCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466065 True 607 lncRNA 0.45 1 4128994 4129600

Neighbor

gene id symbol gene type direction distance location
CI01000299_04122601_04126314 MLE3, MYLZ3, MYL1 coding upstream 2613 4122601 ~ 4126381 (+)
CI01000299_04105476_04115171 LANCL1 coding upstream 13767 4105476 ~ 4115227 (+)
CI01000299_03981006_04059237 ERBB4 coding upstream 69757 3981006 ~ 4059237 (+)
CI01000299_03594891_03678552 ERBB4 coding upstream 449382 3594891 ~ 3679612 (+)
CI01000299_03495286_03498691 NA coding upstream 630265 3494539 ~ 3498729 (+)
CI01000299_04131136_04133439 PCNP coding downstream 1460 4131060 ~ 4133941 (+)
CI01000299_04259743_04263032 ENG1B, EN1 coding downstream 129321 4258921 ~ 4263493 (+)
CI01000299_04269257_04269673 NA coding downstream 138867 4268467 ~ 4269765 (+)
CI01000299_04472181_04474247 NA coding downstream 341356 4470956 ~ 4474271 (+)
CI01000299_04480751_04492829 NA coding downstream 350953 4480553 ~ 4493116 (+)
G405568 NA non-coding upstream 12810 4078975 ~ 4116184 (+)
G405797 NA non-coding upstream 51957 4076805 ~ 4077037 (+)
G405569 NA non-coding upstream 63429 4065131 ~ 4065565 (+)
G405578 NA non-coding upstream 216036 3893020 ~ 3912958 (+)
G405742 NA non-coding upstream 345068 3778033 ~ 3783926 (+)
G405577 NA non-coding downstream 50250 4179850 ~ 4196335 (+)
G405815 NA non-coding downstream 89841 4219441 ~ 4219649 (+)
G405817 NA non-coding downstream 93561 4223161 ~ 4223448 (+)
G405818 NA non-coding downstream 95215 4224815 ~ 4225273 (+)
G405825 NA non-coding downstream 111260 4240860 ~ 4241092 (+)
G405609 NA other upstream 973820 3154597 ~ 3155174 (+)
G403972 NA other upstream 3522644 604870 ~ 606350 (+)
G403609 NA other upstream 3718206 364139 ~ 410788 (+)
G403578 NA other upstream 4056723 35462 ~ 72271 (+)
G405842 NA other downstream 165933 4295533 ~ 4320141 (+)
CI01000299_04703290_04704365 NA other downstream 572782 4703071 ~ 4704780 (+)
G406096 NA other downstream 794862 4924462 ~ 4927844 (+)

Expression


Co-expression Network