G407340


Basic Information

Item Value
gene id G407340
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4259482 ~ 4263461 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468013
TTTGGCTTGAAGCGTTGGTTCAGTCACGCATTTGAAGAACTGTGAGATAAGGGATTTAAGAGACAGGGCTATCACAAAAACTCTAACAAGCCTGACACTTAGGCCTACTGAAACGGTGAGCAACCACATTGGGTAAGGAGAAGAAACGTTAGAAATATTCAGCAAGTAAGGAGCAATATAGACATCCCCTTACCTGGAATTAAATATACACATCTTACAGTTTTGGCTATATATAAATTTTCATAGTGTTCGTATTTAGATGCATGTCCATATACTGTATGATAAACAGAAATTTGTTTAAATATCGTATCTTCGTTTCTTCGCAGAACTCGAAGACATTTCCTTTTCATTTGATTCATAAAAATATGAAAAATCACTTTTGTTGGGGTCAGCGTCCATGGCCTTTTATAGGAGAGAAGCCGGGCCATTTTATTCGCTATCTTCTTTTTCATCTTGAACTGTGGTTGTGGAATGGTTGTAGAGTCCTTGAGCCATGAGCTGAAGAGCGAGGCCGTTTTTATAGCCGGAGGCCTTTTTGATTTTGGCTCTCTTATTCTGGAACCAGATTTTTATTTGTGACTCATTGAGGTTGAGTTCCTGGGCCAGCGACTGTCTCCGCTGCTCCGTAATGTACCGATTCGCCTGAAACTCGGCTTTAAGTCTCTGCAGCTGTTCAGCCGTGAAAGCGGTTCTTGGTCGCTTGTCTTCCTTCTCGCTTTTCTTCTTTTTCAATTTTCGTGTCCTTGGGCCTAGTGTAGAAACAGATGAAGGTCTGTCCGAGTACCTGGTGCAGTACACCCACGCAGGCCATAGTAAAGGCTGCGATTCTTTAACTGGCGGAGTTCCCCCGTTAGCGTTCACCACCATTATCGGCGTCGTATTCTCCCCGTACCTTGCTGTGGTAGTTCCATTTCCTTCGACAAGCTTTGCCGAGGTCTGCTTTGAGGATGGCGAAGACGACGAGGACGAAGAAGTGCTGTCACTACTGCAGTTTGAATCCTGGCAAAGGCTGCTATTATGCGACGGCCTTATTACCATAGGGTTAACATTCTCCCTACCCGAGGTTTGCGCCCGGTCCCTACTCCCAAGATCTTTCTTGCAGCCGAAATCTGGCCTTAGAATATTGTCGATGAAAAAGTTCGTGGTTCTGTGGGCTTGCTGCGCAGCCTGGTGAGGTAAAATCGGAGGAGATGGTATATTGGGTGAGAGCGAGACGCTCTCGGATTCAGTCGAATCACGACTATTTTGATCCTTTTGCTCCTCCATGACAGCTGGATCGTGGTCTGCACTCCAAAATTCCACTTGTTGCAAAGAGCGGTATCCGGATAAGAACAAACAAGAATGCAGTCTATAGTGTTAAAATAAAGGTATACGAAATACCTTAAGAGAAGCGACTGTCATAGCATCGGAATGCTTTCCGCGATCGAGGCGTTTCAAGTGTCAAAACACACCCGTTATTCATGTCAGACAATACATCGCGCGATGCTCCGCAGTCCCCGACTCGCTGCCCCGTGTGACAGCTCGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468013 True 1527 lncRNA 0.46 2 4259482 4263461

Neighbor

gene id symbol gene type direction distance location
CI01000299_04242809_04251680 ARGLU1 coding downstream 7617 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 19690 4227520 ~ 4239792 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 61598 4184967 ~ 4197884 (-)
CI01000299_04171373_04175441 NA coding downstream 84041 4171149 ~ 4175441 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding downstream 94767 4158001 ~ 4164715 (-)
CI01000299_04370401_04385955 RADIL coding upstream 106940 4370401 ~ 4388020 (-)
CI01000299_04398464_04403711 NA coding upstream 133013 4393404 ~ 4403711 (-)
CI01000299_04456420_04468754 NA coding upstream 192768 4456229 ~ 4469450 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 324333 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 339930 4603391 ~ 4609353 (-)
G407330 NA non-coding downstream 51328 4207797 ~ 4208154 (-)
G407296 NA non-coding downstream 79855 4156825 ~ 4179627 (-)
G407318 NA non-coding downstream 130262 4129003 ~ 4129220 (-)
G407288 NA non-coding downstream 131842 4121679 ~ 4127640 (-)
G407306 NA non-coding downstream 192834 4066205 ~ 4066648 (-)
G407343 NA non-coding upstream 2893 4266354 ~ 4266553 (-)
G407344 NA non-coding upstream 3758 4267219 ~ 4267442 (-)
G407348 NA non-coding upstream 8451 4271912 ~ 4272172 (-)
G407352 NA non-coding upstream 17703 4281164 ~ 4281377 (-)
G407387 NA non-coding upstream 86062 4349523 ~ 4349764 (-)
G405053 NA other downstream 2241432 2017687 ~ 2018050 (-)
G404976 NA other downstream 2378494 1855639 ~ 1880988 (-)
G404784 NA other downstream 2599482 1659655 ~ 1660000 (-)
G404372 NA other downstream 3183591 1070607 ~ 1075891 (-)
G407413 NA other upstream 212533 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 662507 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 1177876 5427661 ~ 5443433 (-)
G407805 NA other upstream 1564375 5835889 ~ 5835989 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000088 en1b coding NC_007112.7 CM002885.2 7679328 ~ 7683372 (+)