G405909


Basic Information

Item Value
gene id G405909
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4393464 ~ 4395443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466426
TTTATTCTTCGTATTTATTGATCAACCCATAGACATACAAAATGCATAGAATGCAGGACTGAAATAATGATTCAGAGAGAAGGAAGTTTCCTTAATAAAAAGCATTGGTATGAAATAACATGGTCTTAATACAAATACAAAACCTGGAGCAATACAAACAATGCAGAAAAATCACAATCACAAATACCTTCATGTGAAAGGATCAAAAGACATTTATTTTTATGCAGAATGGCCAACAACACAAAGCCTTGAACTGTTCTGAAACACACCCAAACTAGAAAAGGCACAAATGATATTTACAGTGAGGTCAGGGTTAGGTTTCAAGTTAAAATAGAGGATTCACTCATTTTACTGAATTAATATTTTCATAATTCTCCCCAACATTAAGGACAGGTCGGCAGCCTGATGTATGTGAAGTTTGGTGAACCGACTACACCAAATTCTACATTATACATTATTTAAGAAAGATTTTTTTCCGGACAAAATAGCATTAAATTAGTCTTTTATAACTTGTATTGTAGTGCATTTTCGTTTGGCTTTGAGTCAAGGGTAAACTATAAGCTTTCCATCATTTCAACATGTAAAAACACCAATTAATGCATTTATCCACCATCCAGCATATTCTAGTGACTCAAAAGTGAGAGGAAGGAGACTTTACATTCAGTATGCACTCGTTAATAAGTTATGTGTTGTTTTCATTCAAGGTCAAAGGAAATCTAAATGTATATAATCTCAGGCTGAGTGGCAGTGAAAGCTGTATGATGGATGTAAACTGTCTGCTCCTTCATATTGAATCACCTAAAATACTCCCAAGTAAACACATTTGTCATTAAGTAGAAGAATACACCAAACACAGATATTAAAAAAAGCAGTCAACAATGGCAAATACAGAGAACACTTAATACAATAACAAAAGTCATTAACACAATTTGAAATCATTAAAAACTCATTCTACCATTGGGTTCTATAATACTTGCAAAACTGAACATTATAGGCAACAGCTTCTGTAACATCAACACTTACTGAGTTATTAAAAGGATCCTTAGGGTCTTATGTATCTACAGAAAATTATATTGTCAATGCAACTCGGTAAAGCAAAAAAATGAGGGCAGAAGCAATTTCAAGTTCAAACTGAAATCTTAAGTCACAAACAGCCCTTACTATCAACTAAAACCCTTAAGGGAGCCAAAACGTACCTGACAGACTGTTGCAAGGTCACCGTGATTTTGCCAAGTAAGACATGTTCCTGGGTCAACATATTTTGTTGATATTCCTGTCCGAACATTTAGCCCTAACCCTATCCCTACCCTCAAAATCAGAGGGAAATGATAGGTGAATAACACTAACGTAGAAGCACCTATTGTCACGATACTGGAATTTCTAACTTCGATACGATACAGCGAGTGATTCTCTTTATGCTTTTTGATTAACATGACAGACAGCAGCAGGTTTATTAGGCTGCTGTCACTTTAAGATCTGATGCACGGATCCAATATACTGTTACACAAGATCCGTTTTCTCTCAATTGTTTACGTTCCAAAACTGACTGTGTTTATTTGACTACTCGGCAAGATGGGCATTTTGACATAATTTTGTATGTATTTGACCATTTAAGCACATTAAGCCTAGAAAAAGAAGTCAATTTGGTACTCGCGAGCTGTCTGAGAGGCGACTTTATGAGAGCGCCGCTTATATAGATCAGTGGTGTGTGCGCTTTTGATGTGAGCGCGAAACCTGTGGGAATGACTAAAATTATGCGCAATACAATAACTATTCAATCGGAGCGAATGAGATGAGTGAGTGACAGGAGGCGGGTGTGTGTCAATTGATCATATGCATGGAACGTTCTTAAAAACTTCTGCAATAATATAAGCCAGCTGGAAAACTTCCGGTGAAATGTCACTTGTTGGTGAGACAGCATCTTCAATATCCTGAGGTAGCTTTAACAGCATCAGCAGTGTAATACTTATTTTATAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466426 True 1980 lncRNA 0.36 1 4393464 4395443

Neighbor

gene id symbol gene type direction distance location
CI01000299_04269257_04269673 NA coding upstream 123699 4268467 ~ 4269765 (+)
CI01000299_04259743_04263032 ENG1B, EN1 coding upstream 129971 4258921 ~ 4263493 (+)
CI01000299_04131136_04133439 PCNP coding upstream 259662 4131060 ~ 4133941 (+)
CI01000299_04122601_04126314 MLE3, MYLZ3, MYL1 coding upstream 267083 4122601 ~ 4126381 (+)
CI01000299_04105476_04115171 LANCL1 coding upstream 278237 4105476 ~ 4115227 (+)
CI01000299_04472181_04474247 NA coding downstream 75513 4470956 ~ 4474271 (+)
CI01000299_04480751_04492829 NA coding downstream 85110 4480553 ~ 4493116 (+)
CI01000299_04496757_04504238 NA coding downstream 100943 4496386 ~ 4504483 (+)
CI01000299_04513358_04524537 NA coding downstream 117915 4513358 ~ 4526677 (+)
CI01000299_04532498_04539703 NA coding downstream 136655 4532098 ~ 4539919 (+)
G405908 NA non-coding upstream 1951 4391131 ~ 4391513 (+)
G405906 NA non-coding upstream 3320 4389714 ~ 4390144 (+)
G405905 NA non-coding upstream 4807 4388451 ~ 4388657 (+)
G405837 NA non-coding upstream 107904 4285224 ~ 4285560 (+)
G405833 NA non-coding upstream 111834 4281424 ~ 4281630 (+)
G405910 NA non-coding downstream 5136 4400579 ~ 4403306 (+)
G405912 NA non-coding downstream 19349 4414792 ~ 4415011 (+)
G405876 NA non-coding downstream 22861 4418304 ~ 4448995 (+)
G405931 NA non-coding downstream 58149 4453592 ~ 4453869 (+)
G405932 NA non-coding downstream 60003 4455446 ~ 4455685 (+)
G405842 NA other upstream 73323 4295533 ~ 4320141 (+)
G405609 NA other upstream 1238290 3154597 ~ 3155174 (+)
G403972 NA other upstream 3787114 604870 ~ 606350 (+)
G403609 NA other upstream 3982676 364139 ~ 410788 (+)
CI01000299_04703290_04704365 NA other downstream 306939 4703071 ~ 4704780 (+)
G406096 NA other downstream 529019 4924462 ~ 4927844 (+)
G406244 NA other downstream 975738 5371181 ~ 5373579 (+)
G406161 NA other downstream 1842395 6237838 ~ 6300508 (+)

Expression


Co-expression Network