G405881


Basic Information

Item Value
gene id G405881
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4658341 ~ 4663395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466398
CTTTTCCCTCAAATCTGATTGGTTGAGTGGAATGCTGTTCCAGGATCAACAAAAATGTTGATCCAGGAACATGTTGTACTTGGTGAAATCACGTTCACCACTTTGGGGCAACAGTAATCTAGTAAGGCATACAAGTCTTAATATTCGGGATTCACTTTAAAAGAACCTTTTTTTTTTTCTAAGTGTGAAGAGCATTTTAAAAATCTAAAGCACCTTTTTCAAAATAAAGAGCCTTTTGTGGAATGGAAAGATTCCATGGATGTTAAAGGTTCTTCATGGAACCTTTTGAATAAAGAACCTTATAAATGGATCTTTTAAGAACTATTGACTGAAAGGTTCTTTAGGGAACCAAAAATGGTTCTTCTGTGGCATCACTGTGAAAAAACCCTTTTGAAACCTTTATTTTTAAGAGTGTAAAATCAAAACTTTCACCGTCAATACTCTTAGGCTATCAAGAAATGTAAAAAGAAAATGATCAACACTTCATCTGCGTCTTTTTAGATTCATAGAGCATATTGAAGAAACACAAAACAAACTCAATCTAGTTTCACTGGTTTATTGATTGAAAATGACCAGATTCTGTATCATTTTGAAAATATCAAAATGAATGTCTTCTTGCATCTGTTTGCGACATGAAGTCTTCTTATTTCAGTAGTATGTTTCTTTTTCCACCCAGCCTCCTGGGCTCCGCCTAAGGATATATCTTCTAGCTTCATCATAGACGAAGATGAGCAGTGAGTATGGGAAGGCACAGAACCACCAACATGGTTTGAGAGGATACATTCTCAAAGCAACGTCCATGCCTGGACAGTAGGACAAGAAAGCTGCCAGAGCAGTTTCTTCAAACAGTCCAAAGATAAGGATTTTGTTTTTCATTCCTTGCTGTACAATGGAATTCCTTCTGGTTTTACAGATGATCAAGTCGGCCCACTGCACAATCACAATGCTGGCAAAGAATGCCGTGTGGCATGTGAACTCCACAATCTTTCTGCGCTCATACGTCCATTGCTGGCCATAGCTGTCTTCCAGGTCATTGAGATACTTATCGTCCCAGTTGACTCGAATCCCTATTAAATCGGAGGGCAGGAATCCGTTCTCGGCAAGAATTACAAAGTAGCTAAAGAACCCTGCAACTGCTTGCATCATACCGATTTGACCGTAGGCCATACTGATTAGCCTCTCATTCACCAGTTTATCTGTTTTAGCATTTCTGGGTTGTCTCTTCATGATGTCACTTTCTGCAGTTTCATAGGCCAATGAGATAGCAGGAACCATGTCAGTGCCCAGGTCAATGCAGAGAATGGTGACTGTGCCCAAAGGTAGAGGAATATTAGCAATGATGAACAAGAGGAAAGGTGAGATCTCAGGGATGTTACTGGTCAGGGTGTAGGCAATGGACTTCTTCAAGTTGTCAAAGATCAGACGCCCTTCTTCTACTCCAGTGACAATTGAGGCAAAGTTGTCGTCCAGAAGAATCATGTCAGCAGCCTGTTTGGATACGTCAGATCCAGCAATACCCATAGCCACACCAATGTCAGCCTTCTTCAGAGCAGGAGAATCATTGACACCATCACCGGTTACGGCTACAATGGCACCCTGATGGGAGAAAAAACCATTAAAATGGTACCAGCTGGATAAAATCATCTAGCATCAACTAGGATTGGATAGATAACTCTCTAGCTGTACCTGTCGCTGACAACCTTCCACAATGATCAGCTTTTGTTGTGGAGAAGTTCTGGCAAACACAATTTCTGTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466398 True 1758 lncRNA 0.41 8 4658341 4663395

Neighbor

gene id symbol gene type direction distance location
CI01000299_04554181_04557794 NA coding upstream 100501 4554111 ~ 4557840 (+)
CI01000299_04532498_04539703 NA coding upstream 118422 4532098 ~ 4539919 (+)
CI01000299_04513358_04524537 NA coding upstream 131664 4513358 ~ 4526677 (+)
CI01000299_04496757_04504238 NA coding upstream 153858 4496386 ~ 4504483 (+)
CI01000299_04480751_04492829 NA coding upstream 165225 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA coding downstream 39676 4703071 ~ 4704780 (+)
CI01000299_04736806_04740333 CLIC6 coding downstream 73411 4736806 ~ 4740975 (+)
CI01000299_04819297_04829755 NA coding downstream 155290 4818685 ~ 4829987 (+)
CI01000299_04864582_04885052 RUNX1 coding downstream 200797 4864192 ~ 4885385 (+)
CI01000299_04892566_04900169 NA coding downstream 226996 4890391 ~ 4900536 (+)
G405938 NA non-coding upstream 107542 4475988 ~ 4550799 (+)
G405932 NA non-coding upstream 202656 4455446 ~ 4455685 (+)
G405931 NA non-coding upstream 204472 4453592 ~ 4453869 (+)
G405876 NA non-coding upstream 209346 4418304 ~ 4448995 (+)
G405966 NA non-coding downstream 7820 4671215 ~ 4671482 (+)
G405967 NA non-coding downstream 8130 4671525 ~ 4671895 (+)
G406023 NA non-coding downstream 27500 4690895 ~ 4766223 (+)
G405994 NA non-coding downstream 155093 4818488 ~ 4933935 (+)
G405842 NA other upstream 338200 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 524400 4131060 ~ 4133941 (+)
G405609 NA other upstream 1503167 3154597 ~ 3155174 (+)
G403972 NA other upstream 4051991 604870 ~ 606350 (+)
G406096 NA other downstream 261067 4924462 ~ 4927844 (+)
G406244 NA other downstream 707786 5371181 ~ 5373579 (+)
G406161 NA other downstream 1574443 6237838 ~ 6300508 (+)

Expression


Co-expression Network