G406023


Basic Information

Item Value
gene id G406023
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4690895 ~ 4766223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466552
AATGACTATATGTCTGGCTTAAAATGAACCCAAAATGAACCCAAAATGAACCCAAAATGTTGGAAAATAAAAATCAGACACATAATTACTAGAGGAAACAATAATAATCAAAAGGTGAACATTTATTAATAATAAATGTTTTTGTTTAATTATTATTTATTAAACTTATTAATAAATGTTCATTTCCAACATACTTTGGGTTCATTTTAAGCAAGCAATACAGTAATTTTTAAACAATAGTTGAGTTAAATAAACTACCCAGCAGGTTGGGCAAACATTTAACCCAACCGCTGGGTTAAAACAACCCAGTCACTGGGTTTGTCCATTTCCAAACCAACTTGAATTGTTTTTAACCCAGCATTTTTTAGGGTGTAGACATTAATGCGATTAAATGGAGACTTTTGCATCCAATGTTTTTCTTTTGCATGAAATATTGTTTGTCTACAGAGTTTCAACAACATTGTGATGCTCAGATCTCATTATGAACTCCATCTTTTCTTATCAAGTTCTTCCAAGAGCAAGTGGTCAGAGCTGATGTCCATTTTAATTTTATAGCTCAAAACTCTTACTGTATGACTATTTTTATTCCCCAGAATAAACATAACTGGTAGTTTTTGGTCTCCATTTGCTCTCCATTTAATCTCATTGCTGTATAGAACAAAGTTATTGAGACGTTGAAGAGGTCTCATTTACTCTCTGCATTTTCTTTCGCTAGTCTTGAATTCTTGTCCTCTTGTCTGTAATTCTGTCTTTACACCTTTATCTACTCTGATGCCCCTTTCTCTGTTTGTGTACTGTATCATGTTGCTGAGACTCGGCTCGTTAATTGCTCGGTAATTACAGTGCTTCTGTTGATCTGTTCATTTCACAGCGCTGCTACAAACCTTTTAGGCTGTCTGCTCGAAGCTCAGACTCTATTGGATTTGGCTCATGTGCCCCGTCTAACGCTTTGAGAGCTGCACTAATGTGCTGTCAGCTGTTCCACATGCACTTCCTCTGTCGTGATGCGCTCTCCTGCTGGACAACTGTTGCGTCCGCCTAATTTGACCAGGACCCAGACGAGGTGAGAACTGATCTGATCTAACATCACATATGCTCAGAGTGTTTACGGTAACAGATTGTGTTTACTTCGACGTCCTTGCAACACAAATTCCATTGAAATCAACAGATTCACAGCATTCCCAGACAGAGTAAAGTGCTAAGAGACTGTTATAGTTTTTATTATTATTTTGAATTATTTTTTATTTTTATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466552 True 1253 lncRNA 0.36 2 4690895 4766223

Neighbor

gene id symbol gene type direction distance location
CI01000299_04554181_04557794 NA coding upstream 133055 4554111 ~ 4557840 (+)
CI01000299_04532498_04539703 NA coding upstream 150976 4532098 ~ 4539919 (+)
CI01000299_04513358_04524537 NA coding upstream 164218 4513358 ~ 4526677 (+)
CI01000299_04496757_04504238 NA coding upstream 186412 4496386 ~ 4504483 (+)
CI01000299_04480751_04492829 NA coding upstream 197779 4480553 ~ 4493116 (+)
CI01000299_04819297_04829755 NA coding downstream 52462 4818685 ~ 4829987 (+)
CI01000299_04864582_04885052 RUNX1 coding downstream 97969 4864192 ~ 4885385 (+)
CI01000299_04892566_04900169 NA coding downstream 124168 4890391 ~ 4900536 (+)
CI01000299_04906697_04907091 NA coding downstream 140474 4906697 ~ 4910073 (+)
CI01000299_05128395_05192154 NA coding downstream 362125 5128348 ~ 5192994 (+)
G405967 NA non-coding upstream 19000 4671525 ~ 4671895 (+)
G405966 NA non-coding upstream 19413 4671215 ~ 4671482 (+)
G405865 NA non-coding upstream 25851 4649936 ~ 4665044 (+)
G405881 NA non-coding upstream 27500 4658341 ~ 4663395 (+)
G405938 NA non-coding upstream 140096 4475988 ~ 4550799 (+)
G405994 NA non-coding downstream 52265 4818488 ~ 4933935 (+)
G405999 NA non-coding downstream 168092 4934315 ~ 4936448 (+)
G406101 NA non-coding downstream 189927 4956150 ~ 4956356 (+)
G406134 NA non-coding downstream 490516 5256739 ~ 5257212 (+)
G405842 NA other upstream 370754 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 556954 4131060 ~ 4133941 (+)
G405609 NA other upstream 1535721 3154597 ~ 3155174 (+)
G403972 NA other upstream 4084545 604870 ~ 606350 (+)
G406096 NA other downstream 158239 4924462 ~ 4927844 (+)
G406244 NA other downstream 604958 5371181 ~ 5373579 (+)
G406161 NA other downstream 1471615 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G332 NA non-coding NC_048565.1 CM023219.2 370116 ~ 370571 (-)
tiger barb (Puntius tetrazona) G270 NA non-coding NC_056699.1 CM032068.1 1485146 ~ 1485643 (+)