Gene
RNA
| Item | Value |
|---|---|
| gene id | G405994 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4818488 ~ 4933935 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466523 | True | 2342 | lncRNA | 0.37 | 4 | 4818488 | 4933935 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_04736806_04740333 | CLIC6 | coding | upstream | 77513 | 4736806 ~ 4740975 (+) |
| CI01000299_04703290_04704365 | NA | coding | upstream | 113891 | 4703071 ~ 4704780 (+) |
| CI01000299_04554181_04557794 | NA | coding | upstream | 260648 | 4554111 ~ 4557840 (+) |
| CI01000299_04532498_04539703 | NA | coding | upstream | 278569 | 4532098 ~ 4539919 (+) |
| CI01000299_04513358_04524537 | NA | coding | upstream | 291811 | 4513358 ~ 4526677 (+) |
| CI01000299_05128395_05192154 | NA | coding | downstream | 194413 | 5128348 ~ 5192994 (+) |
| CI01000299_05254419_05314859 | NA | coding | downstream | 320484 | 5254419 ~ 5316243 (+) |
| CI01000299_05331367_05364944 | NA | coding | downstream | 397266 | 5331201 ~ 5364977 (+) |
| CI01000299_05392812_05418070 | GART | coding | downstream | 458757 | 5392692 ~ 5418352 (+) |
| CI01000299_05619817_05725510 | NA | coding | downstream | 685769 | 5619704 ~ 5727439 (+) |
| G406023 | NA | non-coding | upstream | 52265 | 4690895 ~ 4766223 (+) |
| G405967 | NA | non-coding | upstream | 146593 | 4671525 ~ 4671895 (+) |
| G405966 | NA | non-coding | upstream | 147006 | 4671215 ~ 4671482 (+) |
| G405865 | NA | non-coding | upstream | 153444 | 4649936 ~ 4665044 (+) |
| G405999 | NA | non-coding | downstream | 380 | 4934315 ~ 4936448 (+) |
| G406101 | NA | non-coding | downstream | 22215 | 4956150 ~ 4956356 (+) |
| G406134 | NA | non-coding | downstream | 322804 | 5256739 ~ 5257212 (+) |
| G406203 | NA | non-coding | downstream | 378233 | 5312168 ~ 5745426 (+) |
| G405992 | NA | non-coding | downstream | 442332 | 5376267 ~ 5379015 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 312571 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 498347 | 4295533 ~ 4320141 (+) |
| CI01000299_04131136_04133439 | PCNP | other | upstream | 684547 | 4131060 ~ 4133941 (+) |
| G405609 | NA | other | upstream | 1663314 | 3154597 ~ 3155174 (+) |
| G406244 | NA | other | downstream | 437246 | 5371181 ~ 5373579 (+) |
| G406161 | NA | other | downstream | 1303903 | 6237838 ~ 6300508 (+) |
