G405999


Basic Information

Item Value
gene id G405999
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4934315 ~ 4936448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466528
TGGGAGTGTAAAGTTCTGTGCATGATCTACCGACGACGCGCAAAATAATGGCCAAACACCAGTAAAATGACTAGCGCAAACCTTAGTAAATCATGATTAATTTAAATACTCTCTTCCCATAAATTTTGCGTCTGAAAGGGAAACTCCTACAAATGCTTACGCAATAAGGTCAGCTGCAAAAATAACCCTGTCCACGCCTTTTCAGCACTATTTTTTTTCACTGCGTGTCTTTAGTAAATCCTAACAGTAGTTTTTTAACACCAAAAGAGGGTTAAGAGGGTTAAAGCTGTTAGTAAATCTGGCCCTTACTGGGTTGCAACAGACTCCTTAAGTTAATAAAACCCTTAGTGAATCCTAAAAAAAAAGTTCTGATTCTTTGAGTTAGAATCTTCTTCTTGTATCATGCTTGGCCAAATAATTGCTGCTTGTATCTATATTTTGTCTCTATATATGTTTTGAAACATTCAAAATTCTTTAATAACTTCCAAGCCCTAAATATCATGTGTGTGAGATGTTTTGAAGCACTCACGTGGCGCTGTGTTCCTCTGCAGCTCGTTTAGTGACAGCAGCATCTGTCCAGTTCTGGGATCCACCAAAGTGGCTTGAGAATTCTGAGTTCCCTTCCTCATCTCATAAGCTGGAGGATTGTAGACTGTGGAGGAAACAAAAATAGGCAAATATGGCCAAAATCTATTATGTGCATTGAATTTTAAAATGAAATTGCAGACATACAGCCGGAAACTCTTCTGTTCATTTCACCAACTTCCTTCTTGAGCATCCCAGTGTTGAGATCCATCAGGAAGCGTCTGGAAGGTTCTGTTCCCTGCCTGCTGAGCTCAACAGGAACTGGTATTTGCTTCTTGGGTTTCACATCAGTGTCCTTCAGAACTGAGTTGTCCCTGTGTTCGTCTTGGACCGTTTGTGGCCCAATTTGTTTCAGTCTACCATTTGGGAATCGATGCAGCGGTCTTGCATGAAGACCTGCACAGCCAACAGGAGCAGCAAGACCCTGAACATCCTGTAGCAAAATATCGAAAAACAATTTAAAAAGTAGTTTGCTGTAGTTTAGCTTACAGTTTCACAGGCTTTTGTGAATGATACCACAGTAACAACACGTTAAATGCTACCTGTGATTGTTTCTGTTCTCAGAAAAATAGATCAATAGATTCTTCAGCGCCGATTTATCCTGTCTGTTTGACTCACCTCACACAAACAGGATCTAATGCACTCTGGAGTCGCCTTTAATAACACGGAGACTCGGATAATAACCTGGTTCAGAGGTTGACATGTATCTGTAATACTCCCTCTTTTTATCTTTTCATCTGCTTTTGTCTCTTAGACAGCGATAAAACATCCGCTCTTTGATCCCAGATATTCTGACGACGACTCAGTTCAACTGATATTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466528 True 1406 lncRNA 0.40 2 4934315 4936448

Neighbor

gene id symbol gene type direction distance location
CI01000299_04906697_04907091 NA coding upstream 24242 4906697 ~ 4910073 (+)
CI01000299_04892566_04900169 NA coding upstream 33779 4890391 ~ 4900536 (+)
CI01000299_04864582_04885052 RUNX1 coding upstream 48930 4864192 ~ 4885385 (+)
CI01000299_04819297_04829755 NA coding upstream 104328 4818685 ~ 4829987 (+)
CI01000299_04736806_04740333 CLIC6 coding upstream 193340 4736806 ~ 4740975 (+)
CI01000299_05128395_05192154 NA coding downstream 191900 5128348 ~ 5192994 (+)
CI01000299_05254419_05314859 NA coding downstream 317971 5254419 ~ 5316243 (+)
CI01000299_05331367_05364944 NA coding downstream 394753 5331201 ~ 5364977 (+)
CI01000299_05392812_05418070 GART coding downstream 456244 5392692 ~ 5418352 (+)
CI01000299_05619817_05725510 NA coding downstream 683256 5619704 ~ 5727439 (+)
G405994 NA non-coding upstream 380 4818488 ~ 4933935 (+)
G406023 NA non-coding upstream 168092 4690895 ~ 4766223 (+)
CI01000299_04703290_04704365 NA non-coding upstream 229535 4703071 ~ 4704780 (+)
G405967 NA non-coding upstream 262420 4671525 ~ 4671895 (+)
G406101 NA non-coding downstream 19702 4956150 ~ 4956356 (+)
G406134 NA non-coding downstream 320291 5256739 ~ 5257212 (+)
G406203 NA non-coding downstream 375720 5312168 ~ 5745426 (+)
G405992 NA non-coding downstream 439819 5376267 ~ 5379015 (+)
G405987 NA non-coding downstream 488141 5424589 ~ 5429645 (+)
G406096 NA other upstream 6471 4924462 ~ 4927844 (+)
CI01000299_04480751_04492829 NA other upstream 428398 4480553 ~ 4493116 (+)
G405842 NA other upstream 614174 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 800374 4131060 ~ 4133941 (+)
G406244 NA other downstream 434733 5371181 ~ 5373579 (+)
G406161 NA other downstream 1301390 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038373 wu:fa56d06 coding NW_003334026.1 KN149797.1 55555 ~ 70688 (-)