Gene
RNA
| Item | Value |
|---|---|
| gene id | G405992 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5376267 ~ 5379015 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466521 | True | 2317 | lncRNA | 0.33 | 2 | 5376267 | 5379015 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05331367_05364944 | NA | coding | upstream | 11290 | 5331201 ~ 5364977 (+) |
| CI01000299_05254419_05314859 | NA | coding | upstream | 60024 | 5254419 ~ 5316243 (+) |
| CI01000299_05128395_05192154 | NA | coding | upstream | 183273 | 5128348 ~ 5192994 (+) |
| CI01000299_04906697_04907091 | NA | coding | upstream | 466194 | 4906697 ~ 4910073 (+) |
| CI01000299_04892566_04900169 | NA | coding | upstream | 475731 | 4890391 ~ 4900536 (+) |
| CI01000299_05392812_05418070 | GART | coding | downstream | 13677 | 5392692 ~ 5418352 (+) |
| CI01000299_05619817_05725510 | NA | coding | downstream | 240689 | 5619704 ~ 5727439 (+) |
| CI01000299_05732790_05737401 | N6AMT1 | coding | downstream | 353775 | 5732790 ~ 5737802 (+) |
| CI01000299_05778912_05790662 | NA | coding | downstream | 399548 | 5778563 ~ 5790755 (+) |
| CI01000299_05799020_05801977 | NA | coding | downstream | 419927 | 5798942 ~ 5802114 (+) |
| G406134 | NA | non-coding | upstream | 119055 | 5256739 ~ 5257212 (+) |
| G406101 | NA | non-coding | upstream | 419911 | 4956150 ~ 4956356 (+) |
| G405999 | NA | non-coding | upstream | 439819 | 4934315 ~ 4936448 (+) |
| G405994 | NA | non-coding | upstream | 442332 | 4818488 ~ 4933935 (+) |
| G405987 | NA | non-coding | downstream | 45574 | 5424589 ~ 5429645 (+) |
| G406315 | NA | non-coding | downstream | 173627 | 5552642 ~ 5554868 (+) |
| G406354 | NA | non-coding | downstream | 255733 | 5634748 ~ 5639866 (+) |
| G406189 | NA | non-coding | downstream | 377762 | 5756777 ~ 5827969 (+) |
| G406164 | NA | non-coding | downstream | 380209 | 5759224 ~ 5762316 (+) |
| G406244 | NA | other | upstream | 2688 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 448423 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 671642 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 870350 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 1056126 | 4295533 ~ 4320141 (+) |
| G406161 | NA | other | downstream | 858823 | 6237838 ~ 6300508 (+) |
