Gene
RNA
| Item | Value |
|---|---|
| gene id | G406220 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6025051 ~ 6025357 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466791 | True | 307 | lncRNA | 0.30 | 1 | 6025051 | 6025357 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_06018839_06023448 | NA | coding | upstream | 1541 | 6018839 ~ 6023510 (+) |
| CI01000299_05988564_06002758 | NA | coding | upstream | 22030 | 5988095 ~ 6003021 (+) |
| CI01000299_05955084_05970603 | NA | coding | upstream | 53634 | 5954216 ~ 5971417 (+) |
| CI01000299_05935373_05943285 | ERCC5 | coding | upstream | 81638 | 5934903 ~ 5943413 (+) |
| CI01000299_05925030_05926229 | NA | coding | upstream | 98754 | 5924670 ~ 5926297 (+) |
| CI01000299_06029307_06034445 | NA | coding | downstream | 3600 | 6028957 ~ 6034956 (+) |
| CI01000299_06074050_06097303 | RASA3 | coding | downstream | 48693 | 6074050 ~ 6097533 (+) |
| CI01000299_06100005_06114087 | NA | coding | downstream | 74360 | 6099717 ~ 6114463 (+) |
| CI01000299_06116505_06128180 | GAS6 | coding | downstream | 90281 | 6115638 ~ 6128450 (+) |
| CI01000299_06177821_06180061 | NA | coding | downstream | 152464 | 6177821 ~ 6180191 (+) |
| G406213 | NA | non-coding | upstream | 9404 | 6013408 ~ 6015647 (+) |
| G406427 | NA | non-coding | upstream | 76123 | 5948698 ~ 5948928 (+) |
| G406168 | NA | non-coding | upstream | 95122 | 5928182 ~ 5929929 (+) |
| G406417 | NA | non-coding | upstream | 125063 | 5899657 ~ 5899988 (+) |
| G406210 | NA | non-coding | upstream | 193310 | 5830084 ~ 5831741 (+) |
| G406458 | NA | non-coding | downstream | 108486 | 6133843 ~ 6134043 (+) |
| G406463 | NA | non-coding | downstream | 110532 | 6135889 ~ 6136121 (+) |
| G406461 | NA | non-coding | downstream | 124242 | 6149599 ~ 6151122 (+) |
| G406470 | NA | non-coding | downstream | 157837 | 6183194 ~ 6183531 (+) |
| G406162 | NA | non-coding | downstream | 164422 | 6189779 ~ 6197674 (+) |
| G406244 | NA | other | upstream | 651472 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 1097207 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 1320426 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 1519134 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 1704910 | 4295533 ~ 4320141 (+) |
| G406161 | NA | other | downstream | 212481 | 6237838 ~ 6300508 (+) |
