Gene
RNA
| Item | Value |
|---|---|
| gene id | G407885 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6026115 ~ 6026325 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU468667 | True | 211 | lncRNA | 0.40 | 1 | 6026115 | 6026325 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05974659_05985294 | NA | coding | downstream | 40509 | 5974391 ~ 5985606 (-) |
| CI01000299_05946615_05949088 | NA | coding | downstream | 76881 | 5946333 ~ 5949234 (-) |
| CI01000299_05927821_05933216 | BLZF1 | coding | downstream | 91283 | 5927314 ~ 5934832 (-) |
| CI01000299_05919510_05924061 | TXNL4B, TXNL4B.S | coding | downstream | 101487 | 5919128 ~ 5924628 (-) |
| CI01000299_05896205_05898855 | NA | coding | downstream | 127258 | 5896043 ~ 5898857 (-) |
| CI01000299_06037407_06054548 | TPP2 | coding | upstream | 9892 | 6036217 ~ 6054548 (-) |
| CI01000299_06130943_06144384 | NA | coding | upstream | 102748 | 6129073 ~ 6144868 (-) |
| CI01000299_06145156_06154533 | NA | coding | upstream | 118630 | 6144955 ~ 6154533 (-) |
| CI01000299_06185794_06195015 | GRK1A, GRK1 | coding | upstream | 159163 | 6185488 ~ 6195015 (-) |
| CI01000299_06197276_06199730 | TFDP1 | coding | upstream | 170281 | 6196606 ~ 6199730 (-) |
| G407884 | NA | non-coding | downstream | 313 | 6025025 ~ 6025802 (-) |
| G407881 | NA | non-coding | downstream | 2451 | 6018542 ~ 6023664 (-) |
| G407825 | NA | non-coding | downstream | 56559 | 5963680 ~ 5969556 (-) |
| G407827 | NA | non-coding | downstream | 80090 | 5945375 ~ 5946025 (-) |
| G407858 | NA | non-coding | downstream | 95569 | 5929639 ~ 5930546 (-) |
| G407810 | NA | non-coding | upstream | 3951 | 6030276 ~ 6030985 (-) |
| G407829 | NA | non-coding | upstream | 60839 | 6087164 ~ 6088221 (-) |
| G407967 | NA | non-coding | upstream | 62177 | 6088502 ~ 6088726 (-) |
| G407949 | NA | non-coding | upstream | 65166 | 6091491 ~ 6091881 (-) |
| G407909 | NA | non-coding | upstream | 66966 | 6093291 ~ 6099458 (-) |
| G407805 | NA | other | downstream | 190126 | 5835889 ~ 5835989 (-) |
| CI01000299_05428160_05443433 | APP, APPA | other | downstream | 570007 | 5427661 ~ 5443433 (-) |
| CI01000299_04913779_04927715 | NA | other | downstream | 1097297 | 4913373 ~ 4927715 (-) |
| G407413 | NA | other | downstream | 1475394 | 4475994 ~ 4550721 (-) |
| CI01000299_06526127_06532048 | CEP97 | other | upstream | 505676 | 6526127 ~ 6532048 (-) |
