G406142


Basic Information

Item Value
gene id G406142
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6279419 ~ 6286426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466709
AGAACGTTCTGGCAAGGTTTTCTCAAAGTCATGAACAAACTTTTGTNNNNNNNNATCTGGTCTTTAATAATGTTCTCAAAACGTTAACACAAAAACATTATTTATTGTTCATGGAACACTTTCTAAATGTTACTAGTTGTTTCAGAACATTCATGGAACATTCAAAAGTAACGTTCCCAGAATGTTTCCAGAATTGTAAAATGGAATGTTCCCTTAACATTTGCATAGCCAAAAAACTGGACGTTCAGGGATCATTCAGAAATAACGTTCTTATAACTTTATGGGTTCTTAGAATATATTTTTGATTGCTGGGGTAACATCACTGATAAATCATCAACATGAATTAAGAGCGTGTCGTTGTTGAGTCACGTTGACTTCCTGTCAGACTCTTCGTACAGGCGTCTTCTGAAGCACCTCTCGCTTTGCTTTGGCTTTTATAGAATTTCTCATCTCTGGCATGACTTTGGCCATGGCGTTCTGGATCCACCGGATGTACTTGGAGACCTGCGTGTAGACGCCGTACTTGCCCTTCCGGGCGCATCCCTCGCCCCAGCTCACCACGCCCGTGACAAACCACGTGTTTTTGTAGCGCGTCACATGCGGCCCGCCGCTGTCGCCCTGACACGCATCTTTTTCCTCCTGGTCATATCCGGCACAGAACATGTGATTGGAGATTTGGAAATTGCTGGACTCTATGCACTTGCCACGGTCGATGTACGGCACCGTTAGCTTCTGGAGGATGGTGGACTGAAGGCCGCCTTCGCGCACACGGCCGAAGCCGCTCACCATACCTTCCTCCTGACGCATCAGCACACGCTCGGCGAAGTCGTTCTCCGGCAGGCAGGCGGGGAGGATGAATCTGGTGAATGTGATGGGCTTGCTGAGCTTAATGAGGGCGATATCGTTGTTGTAGGTGTCCGCCATATACTTCTTGTGAATCAGAATCTCATCTACGTCGTGGGTGACCTCACGACCCTCGTTGACCAGCGTGTCAAACTCACCTAACAGAAGGACGCAAACACTAATGAAAACACCCAAGAACTGATCAAATGTAAATGTGTATCTTGATTGCAATGGATGGAATTTAGGTAAAAGCGTCTGCTAAATGCGTAAATGTAAACAGATGTACTTCAGAATGAGATCTCTTTCATTTACCATTTTTTTTCTCCAAGATGGCCATGAGGGTAAGTGGAGACTTTTACTTAAGTCTCCCTCTCAGATGTTTCTCCTGAGAAAAACCCCCCATAAATCTCACATGTGTCTCCTCTAGAGTTTCAGAAGAGATCTCAATGTGAACGCAAACATCAGATGATCCAAGCACTCTCATTTACAACTTACTGGATGATGACTGTCGACTCATTTGAGTCTGTTTTTATTTCTTCTACACTCTTGAAAATAAAAGTTCCAAAAAGGGTTTTTTGCAGTGATGCAATAAAAGAACCATTTTTGGCTCCTCAATGAACGGCTCTTGAAGGATTAGTTCACTCCTGTAATTTACTCTTCTCCATGTCATTCAAGATGTTCATGTCTTTCTTTCTTCAGTGGAAAAGAAATGAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCACTGGGGTTCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGAGCTCTACACGATCCCAGACGAGGAATAAGAGTCTTATCTAGAGAAACCATCGGACATTTCCTAAAAAAATTACATTTTTTTTTTTTTTTTACATAATCACGTTAGAAAGTCATCTGTCTAAGTTCTTTGTCTGTGTATTCTGGTTCAAAAAGGTAGGGTAGGACAAAAAACTCATTTTCTCATTATCTCATTTTCTTAAAATCATCTGACAACTTCAAAATCGTCTGACATCATTGTTTTACACTTTTTTTTTTTTGCACGTTCACTTTGTAAATTTCTTTTTCACTGAAGAAAGAAAGACATGAACATCTTGCATGACATGGGGGAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAAAGAACCATTTTGCCCAAAAGGTTCTTTAGATTATTAAAATGTTCTAGAAAAATGGTTCCCTTAAGAACTGATCACTGAAAGGTTCCTTGAGGAACCAAAAAATGGTTCTTCTTTTGCATCTCTGCGAAAACCCCTTTTGGAAACTTTATTTTGAAGAGTGAAAAATGATTCCTTGGATGTTAAAAGTTCTAAATGGGATCATCGATATCAATTTATTTTTAAGAGTAATAAAAAGGAGAAACAACACCAAAAAACAATATTGTATTTGAAGAACATCATTAAGCTATTTTGTGCATCAAATGTCTGAAAATATGTGCATGAGAATATTTCAGTTTTGACACAAATGTTGAAGTGTAAAAGAGTTAAAATGTTCCTATAAAAGGCCGTACCTAAGACCACCCTGGTGTAGAGCGACTGATTCATACAGTGAGCGGCCGACAGGATGAAGTACTGGTTCAGGATGGTGCCGCCACAGAAGCCGATGTTGTCTTCATTAATGAGAAGAGCCTGAGAGAACATACAACGTCAACAATAACAGAGTAAAATCGGCATGTTTCATGTCTCCAAAAACTCAAGTATCATGCAAAAGAACAGTCCATGTTTGCATGTCTCTACCTGCCATGGACAATCTCCAGGAGGACATTCCACACCATTGACGATTCTTGTGATTCCTCCAGATGTTTCAGGTAAAATCGGTTCCTCTTGCTCTTTTTTAGCGATGTCCTGCTCGTGGAGGCCGAACATGCTGCTCGTCTCATTGGCCGATGAGTTTGTGGCGTCTATGAAAGACTCGACGGTGGTCTCAATGTGAGTCTCCTCTTCAGTCTCACTGTTGGTGATGTTTGGCATGTGTATGAAGATTCTTCTGGTCTTCGGAGGATGAATGACGCCACATTTG
>TU466710
AGAACGTTCTGGCAAGGTTTTCTCAAAGTCATGAACAAACTTTTGTNNNNNNNNATCTGGTCTTTAATAATGTTCTCAAAACGTTAACACAAAAACATTATTTATTGTTCATGGAACACTTTCTAAATGTTACTAGTTGTTTCAGAACATTCATGGAACATTCAAAAGTAACGTTCCCAGAATGTTTCCAGAATTGTAAAATGGAATGTTCCCTTAACATTTGCATAGCCAAAAAACTGGACGTTCAGGGATCATTCAGAAATAACGTTCTTATAACTTTATGGGTTCTTAGAATATATTTTTGATTGCTGGGGTAACATCACTGATAAATCATCAACATGAATTAAGAGCGTGTCGTTGTTGAGTCACGTTGACTTCCTGTCAGACTCTTCGTACAGGCGTCTTCTGAAGCACCTCTCGCTTTGCTTTGGCTTTTATAGAATTTCTCATCTCTGGCATGACTTTGGCCATGGCGTTCTGGATCCACCGGATGTACTTGGAGACCTGCGTGTAGACGCCGTACTTGCCCTTCCGGGCGCATCCCTCGCCCCAGCTCACCACGCCCGTGACAAACCACGTGTTTTTGTAGCGCGTCACATGCGGCCCGCCGCTGTCGCCCTGACACGCATCTTTTTCCTCCTGGTCATATCCGGCACAGAACATGTGATTGGAGATTTGGAAATTGCTGGACTCTATGCACTTGCCACGGTCGATGTACGGCACCGTTAGCTTCTGGAGGATGGTGGACTGAAGGCCGCCTTCGCGCACACGGCCGAAGCCGCTCACCATACCTTCCTCCTGACGCATCAGCACACGCTCGGCGAAGTCGTTCTCCGGCAGGCAGGCGGGGAGGATGAATCTGGTGAATGTGATGGGCTTGCTGAGCTTAATGAGGGCGATATCGTTGTTGTAGGTGTCCGCCATATACTTCTTGTGAATCAGAATCTCATCTACGTCGTGGGTGTAGAGCGACTGATTCATACAGTGAGCGGCCGACAGGATGAAGTACTGGTTCAGGATGGTGCCGCCACAGAAGCCGATGTTGTCTTCATTAATGAGAAGAGCCTGAGAGAACATACAACGTCAACAATAACAGAGTAAAATCGGCATGTTTCATGTCTCCAAAAACTCAAGTATCATGCAAAAGAACAGTCCATGTTTGCATGTCTCTACCTGCCATGGACAATCTCCAGGAGGACATTCCACACCATTGACGATTCTTGTGATTCCTCCAGATGTTTCAGGTAAAATCGGTTCCTCTTGCTCTTTTTTAGCGATGTCCTGCTCGTGGAGGCCGAACATGCTGCTCGTCTCATTGGCCGATGAGTTTGTGGCGTCTATGAAAGACTCGACGGTGGTCTCAATGTGAGTCTCCTCTTCAGTCTCACTGTTGGTGATGTTTGGCATGTGTATGAAGATTCTTCTGGTCTTCGGAGGATGAATGACGCCACATTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466709 False 2929 lncRNA 0.41 3 6279419 6286426
TU466710 True 1456 lncRNA 0.47 3 6279419 6286426

Neighbor

gene id symbol gene type direction distance location
CI01000299_06269853_06274289 PCID2 coding upstream 5026 6269602 ~ 6274393 (+)
CI01000299_06233485_06239858 NA coding upstream 39517 6232572 ~ 6239902 (+)
CI01000299_06223295_06227054 ADPRHL1 coding upstream 52233 6222892 ~ 6227186 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding upstream 58348 6217616 ~ 6221071 (+)
CI01000299_06177821_06180061 NA coding upstream 99228 6177821 ~ 6180191 (+)
CI01000299_06312445_06318421 NA coding downstream 25614 6312040 ~ 6318421 (+)
CI01000299_06322253_06326504 CREG1 coding downstream 35827 6322253 ~ 6326562 (+)
CI01000299_06396938_06400105 NA coding downstream 110512 6396938 ~ 6401342 (+)
CI01000299_06416707_06422267 NA coding downstream 130281 6416707 ~ 6422648 (+)
CI01000299_06424909_06425694 NA coding downstream 138385 6424811 ~ 6425733 (+)
G406196 NA non-coding upstream 13189 6265754 ~ 6266230 (+)
G406478 NA non-coding upstream 72375 6206834 ~ 6207044 (+)
G406162 NA non-coding upstream 81745 6189779 ~ 6197674 (+)
G406470 NA non-coding upstream 95888 6183194 ~ 6183531 (+)
G406461 NA non-coding upstream 128297 6149599 ~ 6151122 (+)
G406172 NA non-coding downstream 23982 6310408 ~ 6311699 (+)
G406480 NA non-coding downstream 36759 6323185 ~ 6323623 (+)
G406494 NA non-coding downstream 105654 6392080 ~ 6392356 (+)
CI01000299_06541306_06541820 NA non-coding downstream 254836 6541262 ~ 6541985 (+)
G406244 NA other upstream 905840 5371181 ~ 5373579 (+)
G406096 NA other upstream 1351575 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1574794 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1773502 4480553 ~ 4493116 (+)
G405842 NA other upstream 1959278 4295533 ~ 4320141 (+)

Expression


Co-expression Network